mrcImageModelSubfilamentsCreate - Revision history

Kinoshita: Created page with "'''mrcImageModelSubfilamentsCreate''' is Eos's Command that creates filaments model. == List of option == === Main option ===

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2014-07-28T01:18:14Z

Created page with "'''mrcImageModelSubfilamentsCreate''' is Eos's Command that creates filaments model. == List of option == === Main option === <table border="1"> <tr> <th>O..."

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'''mrcImageModelSubfilamentsCreate''' is [[Eos]]'s [[Command]] that creates filaments model.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-nx</td>
<td>Optional</td>
<td>Real length = nx * lx</td>
<td>71</td>
</tr>
<tr>
<td>-ny</td>
<td>Optional</td>
<td>Real length = ny * ly</td>
<td>71</td>
</tr>
<tr>
<td>-nz</td>
<td>Optional</td>
<td>Real length = nz * lz</td>
<td>100</td>
</tr>
<tr>
<td>-lx</td>
<td>Optional</td>
<td>Pixel Size[Angstrom]</td>
<td>5.0</td>
</tr>
<tr>
<td>-ly</td>
<td>Optional</td>
<td>Pixel Size[Angstrom]</td>
<td>5.0</td>
</tr>
<tr>
<td>-lz</td>
<td>Optional</td>
<td>Pixel Size[Angstrom]</td>
<td>5.0</td>
</tr>
<tr>
<td>-position</td>
<td>Optional</td>
<td>subfilaments position from center [A]</td>
<td>70</td>
</tr>
<tr>
<td>-n</td>
<td>Optional</td>
<td>n-helix</td>
<td>3</td>
</tr>
<tr>
<td>-dphi</td>
<td>Optional</td>
<td>rotation angle [degree]</td>
<td>1.395348837</td>
</tr>
<tr>
<td>-sphi</td>
<td>Optional</td>
<td>start angle [degree]</td>
<td>0</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<div>※nx, ny must be odd</div>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>

== Execution example ==
=== Input file's image ===
<table>
<tr>
<td>[[File:Input-mrcImageModelSubfilamentsCreate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
2.09707 (58, 41, 0)<br>
0.00306044<br>
0.0749793<br>
0.00108666<br></p>
</td>
</tr>
</table>

=== Example of options only essential ===
<table>
<tr>
<td><p align="Center">[[File:Outdata-mrcImageModelSubfilamentsCreate.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Outdata1-mrcImageModelSubfilamentsCreate.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
1.98112 (31, 52, 0)<br>
0.00741447<br>
0.0893007<br>
0.000125776<br></p>
</td>
</tr>
</table>

=== Option -nx, -ny, -nz===
====Case: nx=99, ny=99, nz=99====
<table>
<tr>
<td><p align="Center">[[File:Outdata-nxnynz-mrcImageModelSubfilamentsCreate.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Outdata1-nxnynz-mrcImageModelSubfilamentsCreate.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
2.09707 (87, 56, 0)<br>
0.00445187<br>
0.0691579<br>
5.70376e-05<br></p>
</td>
</tr>
</table>

=== Option -lx, -ly, lz===
====Case: lx=8, ly=8, lz=8====
<table>
<tr>
<td><p align="Center">[[File:Outdata-l-mrcImageModelSubfilamentsCreate.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Outdata1-l-mrcImageModelSubfilamentsCreate.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
2.02889 (41, 2, 20)<br>
0.00867218<br>
0.0969264<br>
0.000136516<br></p>
</td>
</tr>
</table>

=== Option -position===
====Case: position=35====
<table>
<tr>
<td><p align="Center">[[File:Outdata-position-mrcImageModelSubfilamentsCreate.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Outdata1-position-mrcImageModelSubfilamentsCreate.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
2.09707 (66, 42, 0)<br>
0.00869178<br>
0.0977788<br>
0.000137717<br></p>
</td>
</tr>
</table>

=== Option -n===
====Case: n=6====
<table>
<tr>
<td><p align="Center">[[File:Outdata-n-mrcImageModelSubfilamentsCreate.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Outdata1-n-mrcImageModelSubfilamentsCreate.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
1.98112 (31, 52, 0)<br>
0.0148289<br>
0.125854<br>
0.000177259<br></p>
</td>
</tr>
</table>

=== Option -dphi===
====Case: dphi=2====
<table>
<tr>
<td><p align="Center">[[File:Outdata-dphi-mrcImageModelSubfilamentsCreate.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Outdata1-dphi-mrcImageModelSubfilamentsCreate.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
1.98112 (31, 52, 0)<br>
0.00741588<br>
0.0894188<br>
0.000125942<br></p>
</td>
</tr>
</table>

=== Option -sphi===
====Case: sphi=90====
<table>
<tr>
<td><p align="Center">[[File:Outdata-sphi-mrcImageModelSubfilamentsCreate.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Outdata1-sphi-mrcImageModelSubfilamentsCreate.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
1.98112 (18, 31, 0)<br>
0.00741446<br>
0.0893007<br>
0.000125776<br></p>
</td>
</tr>
</table>