Kinoshita: Created page with "'''mrcImageMontageCreate''' is Eos's Command that creates a montage image from multiple images. (It adjusts the contrast of the images by averaging image.) == List o..."

2014-07-28T01:42:13Z

Created page with "'''mrcImageMontageCreate''' is Eos's Command that creates a montage image from multiple images. (It adjusts the contrast of the images by averaging image.) == List o..."

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'''mrcImageMontageCreate''' is [[Eos]]'s [[Command]] that creates a montage image from multiple images. (It adjusts the contrast of the images by averaging image.)

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[ASCII]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-nx</td>
<td>Optional</td>
<td>ROI file's Num: x</td>
<td>10</td>
</tr>
<tr>
<td>-ny</td>
<td>Optional</td>
<td>ROI file's Num: y</td>
<td>10</td>
</tr>
<tr>
<td>-W</td>
<td>Optional</td>
<td>ROI file's Width</td>
<td>10</td>
</tr>
<tr>
<td>-H</td>
<td>Optional</td>
<td>ROI file's Height</td>
<td>10</td>
</tr>
<tr>
<td>-AW</td>
<td>Optional</td>
<td>AverageWindow for Pad</td>
<td>2000</td>
</tr>
<tr>
<td>-V</td>
<td>Optional</td>
<td>Addition value</td>
<td>0.0</td>
</tr>
<tr>
<td>-PM</td>
<td>Optional</td>
<td>PadMode</td>
<td>3</td>
</tr>
<tr>
<td>-EdgeAverage</td>
<td>Optional</td>
<td></td>
<td></td>
</tr>
<tr>
<td>-EdgeAverageWindow</td>
<td>Optional</td>
<td>Definition of Edge</td>
<td>4</td>
</tr>
<tr>
<td>-NoAverage</td>
<td>Optional</td>
<td></td>
<td></td>
</tr>
<tr>
<td>-Max</td>
<td>Optional</td>
<td>MaximumValue: If the pixel value is more than this max, the pixel value is assigned to the Value indicated by -V or -VMax.</td>
<td>16383</td>
</tr>
<tr>
<td>-VMax</td>
<td>Optional</td>
<td>Attention: related to -Max </td>
<td>16383</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>

===-i format===
<pre>
hf0000.roi
hf0001.roi
..........
hf000n.roi
</pre>

== Execution example ==
===Input file's data===
<pre>
/Eos/inputnoise-0000.roi
/Eos/inputnoise-0001.roi
/Eos/inputnoise-0002.roi
/Eos/inputnoise-0003.roi
/Eos/inputnoise-0004.roi
/Eos/inputnoise-0005.roi
/Eos/inputnoise-0006.roi
/Eos/inputnoise-0007.roi
/Eos/inputnoise-0008.roi
/Eos/inputnoise-0009.roi
/Eos/inputnoise-0010.roi
/Eos/inputnoise-0011.roi
/Eos/inputnoise-0012.roi
/Eos/inputnoise-0013.roi
/Eos/inputnoise-0014.roi
/Eos/inputnoise-0015.roi

</pre>

<div>ROI file used(Upper left → Upper right: 0000 - 0008、Lower left → Lower right: 0008 - 0015)</div>
<table>
<tr>
<td>[[File:Inputnoise-0000.roi-mrcImageROIs.png]]</td>
<td>[[File:Inputnoise-0001.roi-mrcImageROIs.png]]</td>
<td>[[File:Inputnoise-0002.roi-mrcImageROIs.png]]</td>
<td>[[File:Inputnoise-0003.roi-mrcImageROIs.png]]</td>
<td>[[File:Inputnoise-0004.roi-mrcImageROIs.png]]</td>
<td>[[File:Inputnoise-0005.roi-mrcImageROIs.png]]</td>
<td>[[File:Inputnoise-0006.roi-mrcImageROIs.png]]</td>
<td>[[File:Inputnoise-0007.roi-mrcImageROIs.png]]</td>
</tr>
<tr>
<td>[[File:Inputnoise-0008.roi-mrcImageROIs.png]]</td>
<td>[[File:Inputnoise-0009.roi-mrcImageROIs.png]]</td>
<td>[[File:Inputnoise-0010.roi-mrcImageROIs.png]]</td>
<td>[[File:Inputnoise-0011.roi-mrcImageROIs.png]]</td>
<td>[[File:Inputnoise-0012.roi-mrcImageROIs.png]]</td>
<td>[[File:Inputnoise-0013.roi-mrcImageROIs.png]]</td>
<td>[[File:Inputnoise-0014.roi-mrcImageROIs.png]]</td>
<td>[[File:Inputnoise-0015.roi-mrcImageROIs.png]]</td>
</tr>
</table>

=== Example of options only essential ===
<table>
<tr>
<td>[[File:Outdata-mrcImageMontageCreate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-133.274 (105, 21, 0)<br>
176.036 (132, 0, 0)<br>
13.9823<br>
113.153<br>
1.20485<br></p>
</td>
</tr>
</table>

=== Option -nx, -ny===
====Case: nx=4, ny=4====
<table>
<tr>
<td>[[File:Outdata-nxny-mrcImageMontageCreate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-133.274 (63, 63, 0)<br>
176.036 (48, 21, 0)<br>
17.4778<br>
126.268<br>
1.50319<br></p>
</td>
</tr>
</table>

=== Option -W, -H===
====Case: W=10, H=42, nx=4, ny=4====
<table>
<tr>
<td>[[File:Outdata-WH-mrcImageMontageCreate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-133.274 (33, 130, 0)<br>
176.036 (20, 50, 0)<br>
13.3644<br>
92.0112<br>
1.15014<br></p>
</td>
</tr>
</table>

=== Option -V===
====Case: V=-16, nx=4, ny=4====
<table>
<tr>
<td>[[File:Outdata-V-mrcImageMontageCreate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-149.274 (63, 63, 0)<br>
160.036 (48, 21, 0)<br>
1.47782<br>
126.268<br>
1.50319<br></p>
</td>
</tr>
</table>

=== Option -PM===
====Case: PM=0, nx=4, ny=4====
<table>
<tr>
<td>[[File:Outdata-PM-mrcImageMontageCreate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-168.927 (63, 0, 0)<br>
160.828 (48, 21, 0)<br>
-1.21858e-06<br>
124.739<br>
1.48499<br></p>
</td>
</tr>
</table>

=== Option -NoAverage===
====Case: NoAverage, nx=4, ny=4====
<table>
<tr>
<td>[[File:Outdata-NoAverage-mrcImageMontageCreate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-143.846 (66, 21, 0)<br>
174.773 (68, 1, 0)<br>
17.4778<br>
131.393<br>
1.5642<br></p>
</td>
</tr>
</table>

=== Option -Max===
====Case: Max=150, nx=4, ny=4====
<table>
<tr>
<td>[[File:Outdata-Max-mrcImageMontageCreate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-133.274 (63, 63, 0)<br>
148.857 (26, 21, 0)<br>
4.4666<br>
118.645<br>
1.41244<br></p>
</td>
</tr>
</table>

=== Option -VMax===
====Case: VMax=150, Max=150, nx=4, ny=4====
<table>
<tr>
<td>[[File:Outdata-VMax-mrcImageMontageCreate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-133.274 (63, 63, 0)<br>
150 (47, 21, 0)<br>
16.2863<br>
124.917<br>
1.48711<br></p>
</td>
</tr>
</table>

mrcImageMontageCreate - Revision history

Kinoshita: Created page with "'''mrcImageMontageCreate''' is Eos's Command that creates a montage image from multiple images. (It adjusts the contrast of the images by averaging image.) == List o..."