mrcImageNfoldAxisSearch - Revision history

Kinoshita: Created page with "'''mrcImageNfoldAxisSearch''' is Eos's Command that performs search of the rotation axis. == List of option == === Main option === ..."
2014-07-28T05:08:54Z
Created page with "'''mrcImageNfoldAxisSearch''' is Eos's Command that performs search of the rotation axis. == List of option == === Main option === <table border="1"> <tr>..."
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'''mrcImageNfoldAxisSearch''' is [[Eos]]'s [[Command]] that performs search of the rotation axis.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Optional</td>
<td>Output: [[ASCII]](centre)</td>
<td>stdout</td>
</tr>
<tr>
<td>-O</td>
<td>Optional</td>
<td>Output: [[mrcImage]](shifted Image)</td>
<td>stdout</td>
</tr>
<tr>
<td>-res</td>
<td>Optional</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-n</td>
<td>Essential</td>
<td>Input: nFold</td>
<td>2</td>
</tr>
<tr>
<td>-delPHI</td>
<td>Optional</td>
<td>Input: delPHI: [degree]</td>
<td>1.0</td>
</tr>
<tr>
<td>-rangex</td>
<td>Optional</td>
<td>Input: range: [pixel size]: (minx, maxx, delx)</td>
<td>(-3, 3, 1)</td>
</tr>
<tr>
<td>-rangey</td>
<td>Optional</td>
<td>Input: range: [pixel size]: (miny, maxy, dely)</td>
<td>(-3, 3, 1)</td>
</tr>
<tr>
<td>-rangez</td>
<td>Optional</td>
<td>Input: range: [pixel size]: (minz, maxz, delz)</td>
<td>(-3, 3, 1)</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>

== Execution example ==
===[[Media:Input-121P.mrc | Input file]] image===
<table>
<tr>
<td><p align="Center">[[File:Input-mrcImageNfoldAxisSearch.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Input1-mrcImageNfoldAxisSearch.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
3500.79 (49, 53, 30)<br>
11.0585<br>
118.123<br>
0.118123<br></p>
</td>
</tr>
</table>

=== Example of options only essential ===
====Case: n=2====
<div>Output</div>
<pre>
GC in lmrcImageDeterminationOfPolarAxisByAssumingNfold : 49.2168 51.5903 52.2385
Rotational Symmetry: 2
</pre>

<div>-o's data</div>
<pre>
Centre: 52.2168 53.5903 52.2385
</pre>

<div>-O's image</div>
<table>
<tr>
<td><p align="Center">[[File:Outdata-mrcImageNfoldAxisSearch.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Outdata1-mrcImageNfoldAxisSearch.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-395.564 (43, 37, 55)<br>
3015.16 (48, 58, 47)<br>
11.0585<br>
120.46<br>
0.12046<br></p>
</td>
</tr>
</table>

<div>-res's image</div>
<table>
<tr>
<td>[[File:Outdata2-mrcImageNfoldAxisSearch.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">1.28742 (6, 5, 0)<br>
1.33361 (0, 6, 0)<br>
1.30484<br>
0.0111512<br>
0.00159303<br></p>
</td>
</tr>
</table>

=== Option -delPHI===
====Case: delPHI=0.1, n=2====
<div>Output</div>
<pre>
GC in lmrcImageDeterminationOfPolarAxisByAssumingNfold : 49.2168 51.5903 52.2385
Rotational Symmetry: 2
</pre>

<div>-o's data</div>
<pre>
Centre: 52.2168 48.5903 52.2385
</pre>

<div>-O's image</div>
<table>
<tr>
<td><p align="Center">[[File:Outdata-delPHI-mrcImageNfoldAxisSearch.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Outdata1-delPHI-mrcImageNfoldAxisSearch.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-395.564 (43, 42, 55)<br>
3015.16 (48, 63, 47)<br>
11.0585<br>
120.46<br>
0.12046<br></p>
</td>
</tr>
</table>

<div>-res's image</div>
<table>
<tr>
<td>[[File:Outdata2-delPHI-mrcImageNfoldAxisSearch.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">1.29133 (6, 0, 0)<br>
1.33874 (0, 6, 0)<br>
1.30831<br>
0.0115864<br>
0.0016552<br></p>
</td>
</tr>
</table>

=== Option -rangex, -rangey, -rangez===
====Case: rangex=(-10, 10, 2), rangey=(-10, 10, 2), rangez=(-10, 10, 2), n=2====
<div>Output</div>
<pre>
GC in lmrcImageDeterminationOfPolarAxisByAssumingNfold : 49.2168 51.5903 52.2385
Rotational Symmetry: 2
</pre>

<div>-o's data</div>
<pre>
Centre: 53.2168 55.5903 42.2385
</pre>

<div>-O's image</div>
<table>
<tr>
<td><p align="Center">[[File:Outdata-range-mrcImageNfoldAxisSearch.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Outdata1-range-mrcImageNfoldAxisSearch.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-395.564 (42, 35, 65)<br>
3015.16 (47, 56, 57)<br>
11.0585<br>
120.46<br>
0.12046<br></p>
</td>
</tr>
</table>

<div>-res's image</div>
<table>
<tr>
<td>[[File:Outdata2-range-mrcImageNfoldAxisSearch.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">1.28733 (7, 7, 0)<br>
1.37795 (0, 10, 0)<br>
1.32145<br>
0.0217527<br>
0.000596245<br></p>
</td>
</tr>
</table>