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mrcImageNoiseAdd - Revision history
2026-06-04T16:14:43Z
Revision history for this page on the wiki
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http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcImageNoiseAdd&diff=1753&oldid=prev
Kinoshita: /* ------Example of options only essential------ */
2014-07-28T05:32:35Z
<p><span dir="auto"><span class="autocomment">------Example of options only essential------</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 05:32, 28 July 2014</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> </tr></div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> </tr></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> </table></div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> </table></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><div><del class="diffchange diffchange-inline">※処理を行う際に、標準偏差の値は指定していないため自動で設定される</del></div></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><div><ins class="diffchange diffchange-inline">In the default setting, SD Value is set automatically.</ins></div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><div><del class="diffchange diffchange-inline">この画像は標準偏差の値が16</del>.<del class="diffchange diffchange-inline">368182で画像処理されている</del></div></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><div><ins class="diffchange diffchange-inline">At this time, it is set SD=16.368182</ins>.</div></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"> </del></div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===------ Option -SD ------===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===------ Option -SD ------===</div></td></tr>
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Kinoshita
http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcImageNoiseAdd&diff=1734&oldid=prev
Kinoshita: Created page with "'''mrcImageNoiseAdd''' is Eos's Command that adds noise to the image. == List of option == <table border="1"> <div align="left"> <tr> <th>Option</th>..."
2014-07-28T05:21:35Z
<p>Created page with "'''mrcImageNoiseAdd''' is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>'s <a href="/Eos/index.php/Command" title="Command">Command</a> that adds noise to the image. == List of option == <table border="1"> <div align="left"> <tr> <th>Option</th>..."</p>
<p><b>New page</b></p><div>'''mrcImageNoiseAdd''' is [[Eos]]'s [[Command]] that adds noise to the image.<br />
<br />
== List of option ==<br />
<table border="1"><br />
<div align="left"><br />
<tr><br />
<th>Option</th><br />
<th>Essential/Optional</th><br />
<th>Description</th><br />
<th>Default</th><br />
</tr><br />
<tr><br />
<td>-i</td><br />
<td>Essential</td><br />
<td>Input: [[mrcImage]]</td><br />
<td>NULL</td><br />
</tr><br />
<tr><br />
<td>-o</td><br />
<td>Essential</td><br />
<td>Output: [[mrcImage]]</td><br />
<td>NULL</td><br />
</tr><br />
<tr><br />
<td>-SD</td><br />
<td>Optional</td><br />
<td>SD of Image/Signal</td><br />
<td>1.0</td><br />
</tr><br />
<tr><br />
<td>-NS</td><br />
<td>Optional</td><br />
<td>N/S: Attention:Noise to Signal ratio</td><br />
<td>1.0</td><br />
</tr><br />
<tr><br />
<td>-SN</td><br />
<td>Optional</td><br />
<td>S/N: Signal to Noise ratio</td><br />
<td>1.0</td><br />
</tr><br />
<tr><br />
<td>-H</td><br />
<td>Optional</td><br />
<td>High threshold of signal</td><br />
<td>1.0</td><br />
</tr><br />
<tr><br />
<td>-L</td><br />
<td>Optional</td><br />
<td>Low threshold of signal</td><br />
<td>1.0</td><br />
</tr><br />
<tr><br />
<td>-h</td><br />
<td>Optional</td><br />
<td>Help</td><br />
<td> </td><br />
</tr><br />
</div><br />
</table><br />
<br />
<br />
== Execution example ==<br />
===------Input file's image------===<br />
<table><br />
<tr><br />
<td>[[File:Test.nomal.center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">0<br><br />
65.5929<br><br />
5.45036<br><br />
12.3043<br><br />
0.153804<br></p><br />
</td><br />
</tr><br />
</table><br />
<br />
===------Example of options only essential------===<br />
<table><br />
<tr><br />
<td>[[File:Test.noise.center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-58.2366<br><br />
109.19<br><br />
5.32224<br><br />
20.6356<br><br />
0.257945<br></p><br />
</td><br />
</tr><br />
</table><br />
<div>※処理を行う際に、標準偏差の値は指定していないため自動で設定される</div><br />
<div>この画像は標準偏差の値が16.368182で画像処理されている</div><br />
<br />
===------ Option -SD ------===<br />
<table><br />
<tr><br />
<td align="top">Case: SD=5</td><br />
<td>[[File:Test.noise.SD5center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-15.9686<br><br />
67.0627<br><br />
5.44991<br><br />
13.1441<br><br />
0.164301<br></p></td><br />
</tr><br />
<tr><br />
<td align="top">Case: SD=10</td><br />
<td>[[File:Test.noise.SD10center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-40.2798<br><br />
87.9802<br><br />
5.6276<br><br />
15.9052<br><br />
0.198815<br></p></td><br />
</tr><br />
<tr><br />
<td align="top">Case: SD=30</td><br />
<td>[[File:Test.noise.SD30center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-120.839<br><br />
154.284<br><br />
5.98209<br><br />
32.4642<br><br />
0.405802<br></p></td><br />
</tr><br />
</table><br />
<br />
===------ Option -NS ------===<br />
<table><br />
<tr><br />
<td align="top">Case: NS=1</td><br />
<td>[[File:Test.noise.NS1center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-57.891<br><br />
87.4796<br><br />
5.64436<br><br />
32.4642<br><br />
0.405802<br></p></td><br />
</tr><br />
<tr><br />
<td align="top">Case: NS=10</td><br />
<td>[[File:Test.noise.NS10center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-554.53<br><br />
582.552<br><br />
5.64436<br><br />
20.5337<br><br />
0.256671<br></p></td><br />
</tr><br />
<tr><br />
<td align="top">Case: NS=0.1</td><br />
<td>[[File:Test.noise.NS0.1center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-6.09959<br><br />
69.5869<br><br />
6.9164<br><br />
161.382<br><br />
2.01728<br></p></td><br />
</tr><br />
</table><br />
<br />
===------ Option -SN ------===<br />
<table><br />
<tr><br />
<td align="top">Case: SN=1</td><br />
<td>[[File:Test.noise.SN1center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-65.3038<br><br />
97.9385<br><br />
5.24589<br><br />
20.6135<br><br />
0.257669<br></p></td><br />
</tr><br />
<tr><br />
<td align="top">Case: SN=10</td><br />
<td>[[File:Test.noise.SN10center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-6.99898<br><br />
65.9806<br><br />
5.43102<br><br />
20.6135<br><br />
0.257669<br></p></td><br />
</tr><br />
<tr><br />
<td align="top">Case: SN=0.1</td><br />
<td>[[File:Test.noise.SN0.1center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-573.844<br><br />
549.799<br><br />
7.56358<br><br />
12.4175<br><br />
2.03438<br></p></td><br />
</tr><br />
</table><br />
<br />
===------ Option -H ------===<br />
<table><br />
<tr><br />
<td align="top">Case: H=1</td><br />
<td>[[File:Test.noise.H1center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-1.05484<br><br />
65.6332<br><br />
5.44977<br><br />
162.751<br><br />
2.03438<br></p></td><br />
</tr><br />
<tr><br />
<td align="top">Case: H=50</td><br />
<td>[[File:Test.noise.H50center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-50.8178<br><br />
88.5773<br><br />
5.55986<br><br />
19.5453<br><br />
0.244317<br></p></td><br />
</tr><br />
<tr><br />
<td align="top">Case: H=100</td><br />
<td>[[File:Test.noise.H100center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-57.8901<br><br />
91.2914<br><br />
5.50518<br><br />
20.6183<br><br />
0.257729<br></p></td><br />
</tr><br />
</table><br />
<br />
===------ Option -L ------===<br />
<table><br />
<tr><br />
<td align="top">Case: L=1</td><br />
<td>[[File:Test.noise.L1center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-53.0655<br><br />
101.855<br><br />
5.45203<br><br />
19.5821<br><br />
0.257729<br></p></td><br />
</tr><br />
<tr><br />
<td align="top">Case: L=50</td><br />
<td>[[File:Test.noise.L50center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-12.5503<br><br />
71.3548<br><br />
5.4097<br><br />
12.8456<br><br />
0.160569<br></p></td><br />
</tr><br />
<tr><br />
<td align="top">Case: L=0.1</td><br />
<td>[[File:Test.noise.L0.1center-mrcImageNoiseAdd.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-54.8919<br><br />
96.8201<br><br />
5.76526<br><br />
20.0066<br><br />
0.160569<br></p></td><br />
</tr><br />
</table></div>
Kinoshita