Kinoshita: Created page with "'''mrcImageNormalizedSubtraction''' is Eos's Command that normalizes the density of images, and calculates the subtraction between the images. In addtion, It can calc..."

2014-07-28T06:17:50Z

Created page with "'''mrcImageNormalizedSubtraction''' is Eos's Command that normalizes the density of images, and calculates the subtraction between the images. In addtion, It can calc..."

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'''mrcImageNormalizedSubtraction''' is [[Eos]]'s [[Command]] that normalizes the density of images, and calculates the subtraction between the images. In addtion, It can calculate [[RMSD]] between images. (-rmsd: if set, file output; otherwise, standard output)

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i1</td>
<td>Essential</td>
<td>Input1: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-i2</td>
<td>Essential</td>
<td>Input2: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-nori2</td>
<td>Optional</td>
<td>Output2: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-rmsd</td>
<td>Optional</td>
<td>Output: [[ASCII]](RMSD)</td>
<td>stdout (Standard output by default)</td>
</tr>
<tr>
<td>-pf</td>
<td>Optional</td>
<td>Output: [[ASCII]](パラメータ)</td>
<td>stdout (Standard output by default)</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>+1</td>
<td>Sigma!=1.0 </td>
</tr>
<tr>
<td>+2</td>
<td>Stdout</td>
</tr>
<tr>
<td>+4</td>
<td>Reversed</td>
</tr>
<tr>
<td>+8</td>
<td>Robust Test</td>
</tr>
</table>

== Execution example ==
===Input file1 image===
<table>
<tr>
<td>[[File:Input1-mrcImageNormalizedSubtraction.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
255<br>
21.0538<br>
47.6709<br>
0.595886<br></p>
</td>
</tr>
</table>

===Input file2 image===
<table>
<tr>
<td>[[File:Input2-mrcImageNormalizedSubtraction.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
255<br>
111.211<br>
32.7239<br>
0.409049<br></p>
</td>
</tr>
</table>

=== Example of options only essential ===
====Output====
<div>-rmsd, -pf is standard output if not set.</div>
<pre>
a= -76.811897, b= 0.879999, r= 0.000000,
sigma_a= 1.679392, sigma_b= 0.014486,
RMSD: 179.359329
</pre>

====-o image====
<table>
<tr>
<td>[[File:Outdata-mrcImageNormalizedSubtraction.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
255<br>
147.638<br>
101.846<br>
1.27308<br></p>
</td>
</tr>
</table>

====-nori2 image====
<table>
<tr>
<td>[[File:Outdata2-mrcImageNormalizedSubtraction.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
255<br>
77.1355<br>
90.1288<br>
1.12661<br></p>
</td>
</tr>
</table>

===-rmsd data===
<div>Output is written to the specified file.</div>
<pre>
RMSD: 179.359329
</pre>

===-pf data===
<div>Output is written to the specified file.</div>
<pre>
a= -76.811897, b= 0.879999, r= 0.000000,
sigma_a= 1.679392, sigma_b= 0.014486,
</pre>

=== Option -m===
====m=4====
=====-o image=====
<table>
<tr>
<td>[[File:Outdata-m4-mrcImageNormalizedSubtraction.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0<br>
255<br>
102.362<br>
100.504<br>
1.2563<br></p>
</td>
</tr>
</table>

mrcImageNormalizedSubtraction - Revision history

Kinoshita: Created page with "'''mrcImageNormalizedSubtraction''' is Eos's Command that normalizes the density of images, and calculates the subtraction between the images. In addtion, It can calc..."