mrcImageOddBoxel - Revision history

Kinoshita: Created page with "'''mrcImageOddBoxel''' is Eos's Command. == List of option == === Main option === ..."
2014-07-29T00:05:42Z
Created page with "'''mrcImageOddBoxel''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essential/Optional</th>..."
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'''mrcImageOddBoxel''' is [[Eos]]'s [[Command]].

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-I</td>
<td>Essential</td>
<td>Input: [[ASCII]] ([[mrcImage]] List)</td>
<td>stdin</td>
</tr>
<tr>
<td>-Iter</td>
<td>Optional</td>
<td>IterationFlag</td>
<td></td>
</tr>
<tr>
<td>-M</td>
<td>Optional</td>
<td>MolecularWeight (for iteration only)</td>
<td>1.0</td>
</tr>
<tr>
<td>-n</td>
<td>Optional</td>
<td>NumberOfMolecule (for iteration only)</td>
<td>1.0</td>
</tr>
<tr>
<td>-Boxel</td>
<td>Optional</td>
<td>Final volume for iteration uning boxel unit</td>
<td>0</td>
</tr>
<tr>
<td>-d</td>
<td>Optional</td>
<td>Density (for iteration only)</td>
<td>1.35</td>
</tr>
<tr>
<td>-I</td>
<td>Optional</td>
<td>Inverse (for iteration only)</td>
<td></td>
</tr>
<tr>
<td>-Abs</td>
<td>Optional</td>
<td>AbsoluteFlag</td>
<td></td>
</tr>
<tr>
<td>-Th</td>
<td>Optional</td>
<td>Threshold for calculation. (for iteration only) </td>
<td>0.0</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>

===-i format===
<pre>
mrcFile1
mrcFile2
.
.
.

</pre>

== Execution example ==
===Input file's data===
<pre>
/Eos/img/1VOM-40.mrc
/Eos/img/1VOM-45.mrc
/Eos/img/1VOM-50.mrc
/Eos/img/1VOM-55.mrc
/Eos/img/1VOM-60.mrc
/Eos/img/1VOM-65.mrc

</pre>

<div>[[Media:1VOM-40.mrc|1VOM-40.mrc]]'s image</div>
<table>
<tr>
<td>[[File:1VOM-40.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
3077.54 (41, 49, 0)<br>
126.786<br>
387.323<br>
4.84154<br></p>
</td>
</tr>
</table>

<div>[[Media:1VOM-45.mrc|1VOM-45.mrc]]'s image</div>
<table>
<tr>
<td>[[File:1VOM-45.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
3099.59 (17, 62, 0)<br>
123.791<br>
381.654<br>
4.77068<br></p>
</td>
</tr>
</table>

<div>[[Media:1VOM-50.mrc|1VOM-50.mrc]]'s image</div>
<table>
<tr>
<td>[[File:1VOM-50.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
3095.88 (33, 57, 0)<br>
143.393<br>
399.986<br>
4.99982<br></p>
</td>
</tr>
</table>

<div>[[Media:1VOM-55.mrc|1VOM-55.mrc]]'s image</div>
<table>
<tr>
<td>[[File:1VOM-55.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
3044.97 (51, 58, 0)<br>
148.952<br>
413.856<br>
5.1732<br></p>
</td>
</tr>
</table>

<div>[[Media:1VOM-60.mrc|1VOM-60.mrc]]'s image</div>
<table>
<tr>
<td>[[File:1VOM-60.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
3026.91 (50, 47, 0)<br>
129.875<br>
386.428<br>
4.83035<br></p>
</td>
</tr>
</table>

<div>[[Media:1VOM-65.mrc|1VOM-65.mrc]]'s image</div>
<table>
<tr>
<td>[[File:1VOM-65.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
3308.47 (26, 42, 0)<br>
105.169<br>
351.901<br>
4.39877<br></p>
</td>
</tr>
</table>

=== Example of options only essential ===
<div>Depending on each input file, (Input file).score is output.</div><br>
<div>1VOM-40.mrc.score's image</div>
<table>
<tr>
<td>[[File:Outdata-mrcImageOddBoxel.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1.42114 (29, 17, 0)<br>
2.04124 (2, 27, 0)<br>
-0.0197871<br>
0.764218<br>
0.00955272<br></p>
</td>
</tr>
</table>

<div>1VOM-45.mrc.score's image</div>
<table>
<tr>
<td>[[File:Outdata1-mrcImageOddBoxel.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1.83809 (22, 35, 0)<br>
2.04124 (67, 51, 0)<br>
-0.0561763<br>
0.700513<br>
0.00875641<br></p>
</td>
</tr>
</table>

<div>1VOM-50.mrc.score's image</div>
<table>
<tr>
<td>[[File:Outdata2-mrcImageOddBoxel.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1.28819 (32, 47, 0)<br>
2.04124 (51, 2, 0)<br>
0.0365122<br>
0.771584<br>
0.0096448<br></p>
</td>
</tr>
</table>

<div>1VOM-55.mrc.score's image</div>
<table>
<tr>
<td>[[File:Outdata3-mrcImageOddBoxel.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1.56769 (31, 48, 0)<br>
2.04124 (37, 5, 0)<br>
0.0387604<br>
0.787144<br>
0.0098393<br></p>
</td>
</tr>
</table>

<div>1VOM-60.mrc.score's image</div>
<table>
<tr>
<td>[[File:Outdata4-mrcImageOddBoxel.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1.53558 (41, 52, 0)<br>
2.04124 (57, 22, 0)<br>
7.09678e-07<br>
0.748489<br>
0.00935612<br></p>
</td>
</tr>
</table>

<div>1VOM-65.mrc.score's image</div>
<table>
<tr>
<td>[[File:Outdata5-mrcImageOddBoxel.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1.62873 (22, 60, 0)<br>
2.04124 (19, 3, 0)<br>
0.000690029<br>
0.82345<br>
0.0102931<br></p>
</td>
</tr>
</table>
<br>

=== Option -Iter===
<div>1VOM-40.mrc.score's image</div>
<table>
<tr>
<td>[[File:Outdata-Iter-mrcImageOddBoxel.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.851998 (56, 33, 0)<br>
1.58332e+11 (14, 68, 0)<br>
6.41423e+07<br>
2.67338e+09<br>
3.34173e+07<br></p>
</td>
</tr>
</table>

<div>1VOM-65.mrc.score's image</div>
<table>
<tr>
<td>[[File:Outdata5-Iter-mrcImageOddBoxel.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1.00711 (42, 62, 0)<br>
5.4919e+11 (59, 58, 0)<br>
1.60488e+08<br>
8.09614e+09<br>
1.01202e+08<br></p>
</td>
</tr>
</table>
<br>

Option Essential/Optional