mrcImageOpening - Revision history

Kinoshita: Created page with "'''mrcImageOpening''' is Eos's Command that performs erosion and dilation by using Structuring Element. == List of option == === Main option === ..."
2014-07-29T00:37:41Z
Created page with "'''mrcImageOpening''' is Eos's Command that performs erosion and dilation by using Structuring Element. == List of option == === Main option === <table border="1">..."
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'''mrcImageOpening''' is [[Eos]]'s [[Command]] that performs erosion and dilation by using Structuring Element.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-oSE</td>
<td>Optional</td>
<td>Output: [[mrcImage]](SE)</td>
<td>NULL</td>
</tr>
<tr>
<td>-SE</td>
<td>Optional</td>
<td>SE</td>
<td>0</td>
</tr>
<tr>
<td>-r</td>
<td>Optional</td>
<td>radius</td>
<td>2</td>
</tr>
<tr>
<td>-n</td>
<td>Optional</td>
<td>Size</td>
<td>5</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>2D Cross3x3: 4-neighbour</td>
</tr>
<tr>
<td>1</td>
<td>2D Square3x3: 8-neighbour</td>
</tr>
<tr>
<td>2</td>
<td>2D Open Disk , need (radius, n)</td>
</tr>
<tr>
<td>3</td>
<td>3D Cross3x3x3: 6-neighbour</td>
</tr>
<tr>
<td>4</td>
<td>3D Cubic3x3x3: 26-neighbour</td>
</tr>
<tr>
<td>5</td>
<td>3D Open Disk , need (radius, n)</td>
</tr>
</table>

== Execution example ==
=== Input file's image ===
<table>
<tr>
<td>[[File:Input-mrcImageOpening.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
255 (49, 32, 0)<br>
21.0538<br>
47.6709<br>
0.595886<br></p>
</td>
</tr>
</table>

=== Example of options only essential ===
====-o image====
<table>
<tr>
<td>[[File:Outdata-mrcImageOpening.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
232 (36, 37, 0)<br>
20.4675<br>
46.1487<br>
0.576859<br></p>
</td>
</tr>
</table>

====-oSE image====
<table>
<tr>
<td>[[File:Outdata2-mrcImageOpening.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
1 (1, 0, 0)<br>
0.555556<br>
0.496904<br>
0.165635<br></p>
</td>
</tr>
</table>

=== Option -SE===
====Case: SE=5====
=====-o image=====
<table>
<tr>
<td>[[File:Outdata-SE-mrcImageOpening.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
209 (36, 37, 0)<br>
19.3409<br>
43.3924<br>
0.542405<br></p>
</td>
</tr>
</table>

=====-oSE image=====
<table>
<tr>
<td>[[File:Outdata2-SE-mrcImageOpening.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
1 (2, 0, 0)<br>
0.52<br>
0.4996<br>
0.09992<br></p>
</td>
</tr>
</table>

=== Option -r===
====Case: r=10, SE=5====
=====-o image=====
<table>
<tr>
<td>[[File:Outdata-r-mrcImageOpening.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
187 (34, 37, 0)<br>
18.4941<br>
41.497<br>
0.518712<br></p>
</td>
</tr>
</table>

=====-oSE image=====
<table>
<tr>
<td>[[File:Outdata2-r-mrcImageOpening.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">1 (0, 0, 0)<br>
1 (0, 0, 0)<br>
1<br>
0<br>
0<br></p>
</td>
</tr>
</table>

=== Option -n===
====Case: n=5, r=10, SE=5====
=====-o image=====
<table>
<tr>
<td>[[File:Outdata-n-mrcImageOpening.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
220 (35, 37, 0)<br>
20.1072<br>
45.2781<br>
0.565976<br></p>
</td>
</tr>
</table>

=====-oSE image=====
<table>
<tr>
<td>[[File:Outdata2-n-mrcImageOpening.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">1 (0, 0, 0)<br>
1 (0, 0, 0)<br>
1<br>
0<br>
0<br></p>
</td>
</tr>
</table>