mrcImageOrientationSearch - Revision history

Kinoshita: Created page with "'''mrcImageOrientationSearch''' is Eos's Command. == List of option == === Main option ===

Option Essential/Optio..."
2014-07-29T00:46:12Z

Created page with "'''mrcImageOrientationSearch''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essential/Optio..."

New page
'''mrcImageOrientationSearch''' is [[Eos]]'s [[Command]].

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-I1</td>
<td>Essential</td>
<td>Input1: [[ASCII]](File List)</td>
<td>NULL</td>
</tr>
<tr>
<td>-I2</td>
<td>Essential</td>
<td>Input2: [[ASCII]](File List)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: In development</td>
<td>NULL</td>
</tr>
<tr>
<td>-T</td>
<td>Optional</td>
<td>Threshold</td>
<td>0</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<br>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>There is one common line position in input file (using Test)</td>
</tr>
<tr>
<td>1</td>
<td>There is correlation file name in input file (common line position is determined Max correlation)</td>
</tr>
<tr>
<td>2</td>
<td> There is correlation file name in input file (common line position is determined Threshold), -T</td>
</tr>
</table>
<br>

===-i1 format===
====m=0 ====
<pre>
XXXX filename1 filename2 commonlineposition1 commonlineposition2 commonlinepositionMode
. . . . . .
. . . . . .
. . . . . .
. . . . . .
</pre>
<div>First data XXXX is not used.<br>
commonlinepositionMode: 1 or z-rotation</div>
<br>

====m=1, 2 ====
<pre>
correlationfilename filename1 filename2
. . .
. . .
. . .
. . .
</pre>
<br>

===-i2 format===
<pre>
filename
.
.
.
.
</pre>
<br>

== Execution example ==
===-i1 data===
<pre>
1 /Eos/img/Input0.mrc /Eos/img/Input1.mrc 275.77 152.88 1
2 /Eos/img/Input0.mrc /Eos/img/Input2.mrc 355.67 239.91 1
3 /Eos/img/Input0.mrc /Eos/img/Input3.mrc 80.08 158.58 1
4 /Eos/img/Input0.mrc /Eos/img/Input4.mrc 0.00 0.00 z-rotation
5 /Eos/img/Input1.mrc /Eos/img/Input2.mrc 240.00 300.00 1
6 /Eos/img/Input1.mrc /Eos/img/Input3.mrc 168.02 311.98 1
7 /Eos/img/Input1.mrc /Eos/img/Input4.mrc 332.88 95.77 1
8 /Eos/img/Input2.mrc /Eos/img/Input3.mrc 270.12 242.50 1
9 /Eos/img/Input2.mrc /Eos/img/Input4.mrc 59.91 175.67 1
10 /Eos/img/Input3.mrc /Eos/img/Input4.mrc 338.58 260.08 1

</pre>
<br>

===-i2 data===
<pre>
/Eos/img/Input0.mrc
/Eos/img/Input1.mrc
/Eos/img/Input2.mrc
/Eos/img/Input3.mrc
/Eos/img/Input4.mrc

</pre>
<br>

=== Example of options only essential ===
<div>Output</div>
<pre>
angle[0] = 4.813094 >> cosine = 0.100535 sine = -0.994933
angle[1] = 2.668259 >> cosine = -0.890054 sine = 0.455856
angle[2] = 6.207613 >> cosine = 0.997146 sine = -0.075501
angle[3] = 4.187219 >> cosine = -0.501360 sine = -0.865239
angle[4] = 4.188790 >> cosine = -0.500000 sine = -0.866025
angle[5] = 5.235988 >> cosine = 0.500000 sine = -0.866025
cosineXr1 = 0.349082 cosineXr2 = -0.224265
ratio = -0.961585
Xrotation1 = 1.214205 Xrotation2 = 1.796985

filename : /Eos/img/Input0.mrc >>> ZENR (0.000000, 0.000000, 0.000000)
filename : /Eos/img/Input1.mrc >>> ZENR (152.880000, 275.770000, 69.568827)
filename : /Eos/img/Input2.mrc >>> ZENR (239.910000, 355.670000, 102.959645)

filename : /Eos/img/Input0.mrc >>> ZENR (0.000000, 0.000000, 0.000000)
filename : /Eos/img/Input1.mrc >>> ZENR (152.880000, 275.770000, 290.431173)
filename : /Eos/img/Input2.mrc >>> ZENR (239.910000, 355.670000, 257.040355)
</pre>
<br>