Kinoshita: Created page with "'''mrcImageParticleCandidateExtract''' is Eos's Command that extracts a candidate of particle by finding the higher density than around image. == List of option == =..."

2014-07-29T02:28:13Z

Created page with "'''mrcImageParticleCandidateExtract''' is Eos's Command that extracts a candidate of particle by finding the higher density than around image. == List of option == =..."

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'''mrcImageParticleCandidateExtract''' is [[Eos]]'s [[Command]] that extracts a candidate of particle by finding the higher density than around image.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-RR</td>
<td>Optional</td>
<td>Input: [A]</td>
<td>100.0</td>
</tr>
<tr>
<td>-RW</td>
<td>Optional</td>
<td>Input: [A]</td>
<td>10.0</td>
</tr>
<tr>
<td>-thres</td>
<td>Optional</td>
<td>Input: threshold of IQ</td>
<td>3.0</td>
</tr>
<tr>
<td>-out</td>
<td>Optional</td>
<td>Output</td>
<td>stdout</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>

== Execution example ==
=== Input file's image ===
<table>
<tr>
<td>[[File:Input-mrcImageParticleCandidateExtract.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
255 
21.0538 
47.6709 
0.595886 
</td>
</tr>
</table>

=== Example of options only essential ===
====Output file's image====
<table>
<tr>
<td>[[File:Outdata-mrcImageParticleCandidateExtract.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
255 
9.36703 
42.704 
0.5338 
</td>
</tr>
</table>

====-out data====
<pre>
38.000000 24.000000 0.000000 3.285927
39.000000 24.000000 0.000000 5.289909
40.000000 24.000000 0.000000 6.301086
41.000000 24.000000 0.000000 5.084664
51.000000 24.000000 0.000000 3.458355
52.000000 24.000000 0.000000 3.290684

...

36.000000 58.000000 0.000000 7.257681
37.000000 58.000000 0.000000 6.887584
38.000000 58.000000 0.000000 5.179653
39.000000 58.000000 0.000000 3.826627
35.000000 59.000000 0.000000 3.485140
36.000000 59.000000 0.000000 4.024090
</pre>

=== Option -RR===
====Case: RR=50====
<table>
<tr>
<td>[[File:Outdata-RR50-mrcImageParticleCandidateExtract.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
7 
0.217344 
0.741059 
0.00926323 
</td>
</tr>
</table>

=== Option -RW===
====Case: RW=30====
<table>
<tr>
<td>[[File:Outdata-RW30-mrcImageParticleCandidateExtract.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
255 
6.42328 
32.0784 
0.40098 
</td>
</tr>
</table>

=== Option -thres===
====Case: thres=1====
=====output file's image=====
<table>
<tr>
<td>[[File:Outdata-thres-mrcImageParticleCandidateExtract.png]]</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 
255 
9.36703 
42.704 
0.5338 
</td>
</tr>
</table>

=====-out Output=====
<pre>
47.000000 19.000000 0.000000 1.098040
48.000000 19.000000 0.000000 1.125516
46.000000 20.000000 0.000000 1.035438
47.000000 20.000000 0.000000 1.264296
48.000000 20.000000 0.000000 1.169891
49.000000 20.000000 0.000000 1.004437

...

29.000000 62.000000 0.000000 1.318240
30.000000 62.000000 0.000000 1.408884
31.000000 62.000000 0.000000 1.180901
33.000000 62.000000 0.000000 1.042541
34.000000 62.000000 0.000000 1.174146
35.000000 62.000000 0.000000 1.107767
</pre>

mrcImageParticleCandidateExtract - Revision history

Kinoshita: Created page with "'''mrcImageParticleCandidateExtract''' is Eos's Command that extracts a candidate of particle by finding the higher density than around image. == List of option == =..."