mrcImagePeakSearch - Revision history

Kinoshita: Created page with "'''mrcImagePeakSearch''' is Eos's Command that searches the peak in the image. == List of option == === Main option ===

Option<..."
2014-07-29T02:33:52Z

Created page with "'''mrcImagePeakSearch''' is Eos's Command that searches the peak in the image. == List of option == === Main option === <table border="1"> <tr> <th>Option<..."

New page
'''mrcImagePeakSearch''' is [[Eos]]'s [[Command]] that searches the peak in the image.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Optional</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-oB</td>
<td>Optional</td>
<td>Output: [[mrcImage]](Binary)</td>
<td>NULL</td>
</tr>
<tr>
<td>-oL</td>
<td>Optional</td>
<td>Output: [[mrcImage]](Label)</td>
<td>NULL</td>
</tr>
<tr>
<td>-oA</td>
<td>Optional</td>
<td>Output: [[mrcImage]](Aarea)</td>
<td>NULL</td>
</tr>
<tr>
<td>-O</td>
<td>Optional</td>
<td>Output: [[ASCII]]: Peak statics</td>
<td>NULL</td>
</tr>
<tr>
<td>-t</td>
<td>Optional</td>
<td>Input: Peak's values are more than t*sigma.</td>
<td>3.0</td>
</tr>
<tr>
<td>-T</td>
<td>Optional</td>
<td>Input: Peak's values are more than T.</td>
<td>0.0</td>
</tr>
<tr>
<td>-a</td>
<td>Optional</td>
<td>Input: [A^2]: Peak's area are more than a</td>
<td>6.0</td>
</tr>
<tr>
<td>-A</td>
<td>Optional</td>
<td>Input: [Pixel^2]: Peak's area are more than A</td>
<td>9</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>

== Execution example ==
=== Input file's image ===
<table>
<tr>
<td>[[File:Input-mrcImagePeakSearch.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (41, 10, 0)<br>
255 (42, 36, 0)<br>
111.211<br>
32.7239<br>
0.409049<br></p>
</td>
</tr>
</table>

=== Example of options only essential ===
====-o ====
<table>
<tr>
<td>[[File:Outdata-mrcImagePeakSearch.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
1 (50, 28, 0)<br>
0.00546875<br>
0.0737485<br>
0.000921856<br></p>
</td>
</tr>
</table>

====-oB ====
<table>
<tr>
<td>[[File:Outdata-oB-mrcImagePeakSearch.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
1 (50, 28, 0)<br>
0.00546875<br>
0.0737485<br>
0.000921856<br></p>
</td>
</tr>
</table>

====-oL ====
<table>
<tr>
<td>[[File:Outdata-oL-mrcImagePeakSearch.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
25 (55, 34, 0)<br>
0.0679687<br>
1.06444<br>
0.0133055<br></p>
</td>
</tr>
</table>

====-oA ====
<table>
<tr>
<td>[[File:Outdata-oA-mrcImagePeakSearch.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
4 (43, 34, 0)<br>
0.0101563<br>
0.155292<br>
0.00194115<br></p>
</td>
</tr>
</table>

=== Option -t===
====Case: t=2====
<div>-o 's image</div>
<table>
<tr>
<td>[[File:Outdata-t-mrcImagePeakSearch.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
1 (53, 22, 0)<br>
0.0376563<br>
0.190363<br>
0.00237954<br></p>
</td>
</tr>
</table>

=== Option -T===
====Case: T=128====
<div>-o 's image</div>
<table>
<tr>
<td>[[File:Outdata-T-mrcImagePeakSearch.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
1 (10, 0, 0)<br>
0.272969<br>
0.445485<br>
0.00556856<br></p>
</td>
</tr>
</table>

=== Option -a===
====Case: a=20====
<div>-o 's image</div>
<table>
<tr>
<td>[[File:Outdata-a-mrcImagePeakSearch.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
1 (43, 34, 0)<br>
0.000625<br>
0.0249922<br>
0.000312402<br></p>
</td>
</tr>
</table>

=== Option -A===
====Case: A=3====
<div>-o 's image</div>
<table>
<tr>
<td>[[File:Outdata-A-mrcImagePeakSearch.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
1 (43, 34, 0)<br>
0.00109375<br>
0.0330538<br>
0.000413173<br></p>
</td>
</tr>
</table>