mrcImageROItoPCAoutputImage - Revision history

Kinoshita: Created page with "'''mrcImageROItoPCAoutputImage''' is Eos's Command. == List of option == === Main option ===

Option Essential/Opt..."
2014-07-30T01:47:34Z

Created page with "'''mrcImageROItoPCAoutputImage''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essential/Opt..."

New page
'''mrcImageROItoPCAoutputImage''' is [[Eos]]'s [[Command]].

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[ASCII]] (Input FileList)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Input: [[ASCII]] (Output File List)</td>
<td>NULL</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<div>PCselection.txt must be put on $EOS_HOME directly.</div>
<br>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>
<br>

===-i, -o format===
<pre>
File1
File2
.
.

</pre>
<br>

===PCselection.txt format===
<pre>
n0
n1
.
.

</pre>
<div>Upper limit of the number of data: 100</div>
<br>

== Execution example ==
===Input file's data===
<pre>
Input-121P-2D-P.mrc
Input-121P-2D1-P.mrc
Input-121P-2D2-P.mrc

</pre>

<div>[[Media:Input-121P-2D-P.mrc | Input-121P-2D-P.mrc]]'s image</div>
<table>
<tr>
<td>[[File:Input-121P-2D-P.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1105.85 (0, 0, 0)<br>
29741.8 (13, 23, 0)<br>
5686.81<br>
5820.04<br>
145.501<br></p>
</td>
</tr>
</table>
<br>

<div>[[Media:Input-121P-2D1-P.mrc | Input-121P-2D1-P.mrc]]'s image</div>
<table>
<tr>
<td>[[File:Input-121P-2D1-P.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1105.85 (0, 0, 0)<br>
30528.7 (8, 21, 0)<br>
5656.23<br>
6199.33<br>
154.983<br></p>
</td>
</tr>
</table>
<br>

<div>[[Media:Input-121P-2D2-P.mrc | Input-121P-2D2-P.mrc]]'s image</div>
<table>
<tr>
<td>[[File:Input-121P-2D2-P.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1105.85 (0, 0, 0)<br>
29425.9 (17, 12, 0)<br>
5666.16<br>
6154.34<br>
153.858<br></p>
</td>
</tr>
</table>
<br>

<div>PCselection.txt's data</div>
<pre>
1
2
3
4
5

...

96
97
98
99
100

</pre>
<br>

<div>-o 's data</div>
<pre>
Outdata0.mrc
Outdata1.mrc
Outdata2.mrc

</pre>
<br>

=== Example of options only essential ===
<div>Outdata0.mrc</div>
<table>
<tr>
<td>[[File:Outdata0-mrcImageROItoPCAoutputImage.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1105.85 (0, 0, 0)<br>
4437.94 (53, 0, 0)<br>
-483.476<br>
1163.44<br>
116.344<br></p>
</td>
</tr>
</table>
<br>

<div>Outdata1.mrc</div>
<table>
<tr>
<td>[[File:Outdata1-mrcImageROItoPCAoutputImage.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1105.85 (0, 0, 0)<br>
7143.97 (25, 0, 0)<br>
-313.788<br>
1911.93<br>
191.193<br></p>
</td>
</tr>
</table>
<br>

<div>Outdata2.mrc</div>
<table>
<tr>
<td>[[File:Outdata2-mrcImageROItoPCAoutputImage.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1105.85 (0, 0, 0)<br>
9384.37 (25, 0, 0)<br>
-80.3565<br>
2079.4<br>
207.94<br></p>
</td>
</tr>
</table>
<br>