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mrcImageRadonTransform - Revision history
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Kinoshita: Created page with "'''mrcImageRadonTransform''' is Eos's Command that performs Radon Transform. == List of option == <table border="1"> <div align="left"> <tr> <th>Option</t..."
2014-07-30T02:07:35Z
<p>Created page with "'''mrcImageRadonTransform''' is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>'s <a href="/Eos/index.php/Command" title="Command">Command</a> that performs Radon Transform. == List of option == <table border="1"> <div align="left"> <tr> <th>Option</t..."</p>
<p><b>New page</b></p><div>'''mrcImageRadonTransform''' is [[Eos]]'s [[Command]] that performs Radon Transform.<br />
<br />
== List of option ==<br />
<table border="1"><br />
<div align="left"><br />
<tr><br />
<th>Option</th><br />
<th>Essential/Optional</th><br />
<th>NULL</th><br />
<th>Default</th><br />
</tr><br />
<tr><br />
<td>-i</td><br />
<td>Essential</td><br />
<td>Input: [[mrcImage]]</td><br />
<td>NULL</td><br />
</tr><br />
<tr><br />
<td>-o</td><br />
<td>Essential</td><br />
<td>Output: [[mrcImage]](Radon)</td><br />
<td>NULL</td><br />
</tr><br />
<tr><br />
<td>-dtheta</td><br />
<td>Optional</td><br />
<td>Input: detaTheta</td><br />
<td>1</td><br />
</tr><br />
<tr><br />
<td>-dphi</td><br />
<td>Optional</td><br />
<td>Input: detaPhi</td><br />
<td>1</td><br />
</tr><br />
<tr><br />
<td>-h</td><br />
<td>Optional</td><br />
<td>Help</td><br />
<td> </td><br />
</tr><br />
</div><br />
</table><br />
<br />
<br />
== Execution example ==<br />
===[[Media:Input-121P.mrc | Input file]] image===<br />
<table> <br />
<tr> <br />
<td>[[File:Input2-121P.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 236)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
0<br></p><br />
</td><br />
</tr><br />
</table><br />
<table> <br />
<tr> <br />
<td>[[File:Input3-121P.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
surface(Level: 236)<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table><br />
<tr><br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">0 (0, 0, 0)<br> <br />
3500.79 (49, 53, 30)<br> <br />
11.0585<br> <br />
118.123<br> <br />
0.118123<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br><br />
<br />
=== Example of options only essential ===<br />
<table><br />
<tr><br />
<td>[[File:Outdata-mrcImageRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
solid<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table><br />
<tr><br />
<td>[[File:Outdata1-mrcImageRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
solid<br><br />
(1, 1, 1)<br> <br />
(0, 1, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table><br />
<tr><br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">( 100, 180, 360)<br> <br />
mrcFloatRadonImage <br> <br />
0 (0, 0, 0)<br> <br />
681534 (48, 135, 0)<br> <br />
110585<br> <br />
157900<br> <br />
62.0289<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
=== Option -dtheta===<br />
====Case: dtheta=30====<br />
<div>[[Media:Outdata-dtheta-mrcImageRadonTransform.radon | Output file]]</div><br />
<table><br />
<tr><br />
<td>[[File:Outdata-dtheta2-mrcImageRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
solid<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table><br />
<tr><br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">( 100, 6, 360)<br> <br />
mrcFloatRadonImage <br> <br />
0 (0, 0, 0)<br><br />
681291 (41, 0, 45)<br><br />
110585<br><br />
157972<br><br />
339.901<br></p><br />
</td><br />
</tr><br />
</table><br />
<br><br />
<br />
=== Option -dphi===<br />
====Case: dphi=2, dtheta=30====<br />
<div>[[Media:Outdata-dphi-mrcImageRadonTransform.radon | Output file]]</div><br />
<table><br />
<tr><br />
<td>[[File:Outdata-dphi2-mrcImageRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
solid<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table><br />
<tr><br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left"> ( 100, 6, 180)<br><br />
mrcFloatRadonImage <br> <br />
0 (0, 0, 0)<br><br />
595996 (57, 3, 7)<br><br />
110585<br><br />
157936<br><br />
480.582<br></p><br />
</td><br />
</tr><br />
</table><br />
<br><br />
<br />
====Case: dphi=30, dtheta=30====<br />
<div>[[Media:Outdata1-dphi-mrcImageRadonTransform.radon | Output file]]</div><br />
<table><br />
<tr><br />
<td>[[File:Outdata-dphi3-mrcImageRadonTransform.png]]</td><br />
<td><p align="left">Used Tool<br> <br />
Style<br> <br />
Boxel Size<br> <br />
Rotation Axis<br><br />
Angle<br></p><br />
</td><br />
<td><p align="left">Chimera<br><br />
solid<br><br />
(1, 1, 1)<br> <br />
(1, 0, 0)<br><br />
90<br></p><br />
</td><br />
</tr><br />
</table><br />
<table><br />
<tr><br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left"> ( 100, 6, 12)<br><br />
mrcFloatRadonImage <br> <br />
0 (0, 0, 0)<br><br />
548332 (43, 5, 5)<br><br />
110585<br><br />
157847<br><br />
1860.25<br></p><br />
</td><br />
</tr><br />
</table><br />
<br></div>
Kinoshita