mrcImageRandomParticlesImageCreate - Revision history

Kinoshita: Created page with "'''mrcImageRandomParticlesImageCreate''' is Eos's Command. == List of option == === Main option ===

Option Essent..."
2014-07-30T02:26:38Z

Created page with "'''mrcImageRandomParticlesImageCreate''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essent..."

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'''mrcImageRandomParticlesImageCreate''' is [[Eos]]'s [[Command]].

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[ASCII]] (File List)</td>
<td>stdin</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>stdout</td>
</tr>
<tr>
<td>-N</td>
<td>Optional</td>
<td>Size: (Nx, Ny)</td>
<td>(1024, 1024)</td>
</tr>
<tr>
<td>-seed</td>
<td>Optional</td>
<td>Input: Seed</td>
<td>0</td>
</tr>
<tr>
<td>-InterpolationMode</td>
<td>Optional</td>
<td>InterpolationMode</td>
<td>2</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<div>If the same settings, it is the same result because it uses Pseudo-random number.</div>
<br>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>
<br>

=== -i format ===
<pre>
mrcFile1
mrcFile2
.
.

</pre>
<br>

== Execution example ==
===Input file's data===
<pre>
Input-1VOM-2D.mrc
Input-121P-2D.mrc
Input-1B7T-2D.mrc

</pre>
<br>

<div>[[:Media:Input-1VOM-2D.mrc|Input-1VOM-2D.mrc]]'s image<div>
<table>
<tr>
<td>[[File:Input-1VOM-2D.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
49749.7 (27, 28, 0)<br>
7212.9<br>
8827.15<br>
110.339<br></p>
</td>
</tr>
</table>
<br>

<div>[[:Media:Input-121P-2D.mrc|Input-121P-2D.mrc]]'s image<div>
<table>
<tr>
<td>[[File:Input-121P.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
30847.6 (43, 53, 0)<br>
1105.85<br>
3410.59<br>
34.1059<br></p>
</td>
</tr>
</table>
<br>

<div>[[Media:Input-1B7T-2D.mrc|Input-1B7T-2D.mrc]]'s image</div>
<table>
<tr>
<td>[[File:Input-1B7T-2D.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
178250 (35, 57, 0)<br>
14921.9<br>
30087.2<br>
475.72<br></p>
</td>
</tr>
</table>
<br>

=== Example of options only essential ===
<table>
<tr>
<td><p align="Center">[[File:Outdata-mrcImageRandomParticlesImageCreate.png]]<br>
This image's size is half of original output file's one.<br></p>
</td>
<td><p align="left">Size<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 1024, 1024, 1)<br>
-12043.1 (499, 781, 0)<br>
172346 (502, 803, 0)<br>
111.487<br>
2281.93<br>
2.22844<br></p>
</td>
</tr>
</table>
<br>

=== Option -N===
====Case: N=(256, 256)====
<table>
<tr>
<td>[[File:Outdata-N-mrcImageRandomParticlesImageCreate.png]]</td>
<td><p align="left">Size<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 256, 256, 1)<br>
-12043.1 (127, 193, 0)<br>
172346 (130, 215, 0)<br>
1783.8<br>
8994.67<br>
35.1354<br></p>
</td>
</tr>
</table>
<br>

<div>In the following, Setting at N=(256, 256)</div>

=== Option -seed===
====Case: seed=1====
<table>
<tr>
<td>[[File:Outdata-seed-mrcImageRandomParticlesImageCreate.png]]</td>
<td><p align="left">Size<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 256, 256, 1)<br>
-8000.95 (7, 191, 0)<br>
171254 (10, 186, 0)<br>
1783.43<br>
8956.46<br>
34.9862<br></p>
</td>
</tr>
</table>
<br>

=== Option -InterpolationMode===
====Case: InterpolationMode=0====
<table>
<tr>
<td>[[File:Outdata-InterpolationMode0-mrcImageRandomParticlesImageCreate.png]]</td>
<td><p align="left">Size<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 256, 256, 1)<br>
0 (0, 0, 0)<br>
178250 (130, 215, 0)<br>
1781.43<br>
8963.02<br>
35.0118<br></p>
</td>
</tr>
</table>
<br>

====Case: InterpolationMode=1====
<table>
<tr>
<td>[[File:Outdata-InterpolationMode1-mrcImageRandomParticlesImageCreate.png]]</td>
<td><p align="left">Size<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 256, 256, 1)<br>
0 (0, 0, 0)<br>
150569 (130, 215, 0)<br>
1783.92<br>
8764.39<br>
34.2359<br></p>
</td>
</tr>
</table>
<br>

====Case: InterpolationMode=3====
<table>
<tr>
<td>[[File:Outdata-InterpolationMode3-mrcImageRandomParticlesImageCreate.png]]</td>
<td><p align="left">Size<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 256, 256, 1)<br>
-4.23359e+06 (122, 226, 0)<br>
1.88336e+08 (130, 214, 0)<br>
1.56278e+06<br>
7.59862e+06<br>
29682.1<br></p>
</td>
</tr>
</table>
<br>