mrcImageRefCreate - Revision history

Kinoshita: Created page with "'''mrcImageRefCreate''' is Eos's Command that creates reference projection image used 3D Reconstruction. == List of option == === Main option ===
2014-07-30T04:00:07Z
Created page with "'''mrcImageRefCreate''' is Eos's Command that creates reference projection image used 3D Reconstruction. == List of option == === Main option === <table border..."
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'''mrcImageRefCreate''' is [[Eos]]'s [[Command]] that creates reference projection image used [[3D Reconstruction]].

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]](3D)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]](2DSet)</td>
<td>NULL</td>
</tr>
<tr>
<td>-p</td>
<td>Optional</td>
<td>Position of Center of model creation: [degree]: (Phi, Omega, Alpha)</td>
<td>(0, 0, 0)</td>
</tr>
<tr>
<td>-w</td>
<td>Optional</td>
<td>Width: [±degree]: (Phi, Omega, Alpha) </td>
<td>(360, 10, 10)</td>
</tr>
<tr>
<td>-d</td>
<td>Optional</td>
<td>Interval of model creation: [degree]: (Phi, Omega, Alpha)</td>
<td>(5, 5, 5)</td>
</tr>
<tr>
<td>-x</td>
<td>Optional</td>
<td>Data length of x in the outputfile.</td>
<td>Data length of x in the inputfile</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<div>Phi: around Z axis, Omega: around Y axis, Alpha: around X axis</div>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>Usual mode</td>
</tr>
<tr>
<td>1</td>
<td>Magnification is changed to unchange molecular distance.</td>
</tr>
</table>

== Execution example ==
===[[Media:Input-121P1.mrc | Input file]] image===
<table>
<tr>
<td><p align="Center">[[File:Input-121P1.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Input1-121P1.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
3500.79 (24, 28, 5)<br>
88.3104<br>
323.414<br>
0.914753<br></p>
</td>
</tr>
</table>

=== Option -w===
====Case: w=(30, 0, 0)====
<table>
<tr>
<td>[[File:Outdata-w-mrcImageRefCreate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-618.193 (35, 39, 6)<br>
37724 (22, 29, 11)<br>
4099.57<br>
5776.94<br>
30.879<br></p>
</td>
</tr>
</table>
<br>

<div>z=0(Header) By [[mrcImageMakeDump]]</div>
<pre>
0 0 0
1 0 0
2 0 0
3 0 5
4 0 5
5 0 5
6 0 30
7 0 0
8 0 0
9 0 0
10 0 0
11 0 0
12 0 0
13 0 0
14 0 0
15 0 0

...
</pre>
<br>

====Case: w=(0, 15, 0)====
<table>
<tr>
<td>[[File:Outdata1-w-mrcImageRefCreate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-847.927 (14, 27, 4)<br>
33249 (13, 17, 5)<br>
5834.45<br>
6371.51<br>
59.158<br></p>
</td>
</tr>
</table>
<br>

<div>z=0(Header) By [[mrcImageMakeDump]]</div>
<pre>
0 0 0
1 0 0
2 0 0
3 0 5
4 0 5
5 0 5
6 0 0
7 0 15
8 0 0
9 0 0
10 0 0
11 0 0
12 0 0
13 0 0
14 0 0
15 0 0

...
</pre>
<br>

====Case: w=(0, 0, 15)====
<table>
<tr>
<td>[[File:Outdata2-w-mrcImageRefCreate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1630.77 (24, 32, 7)<br>
29967.2 (28, 19, 1)<br>
4257.55<br>
5978.44<br>
45.3746<br></p>
</td>
</tr>
</table>
<br>

<div>z=0(Header) By [[mrcImageMakeDump]]</div>
<pre>
0 0 0
1 0 0
2 0 0
3 0 5
4 0 5
5 0 5
6 0 0
7 0 0
8 0 15
9 0 0
10 0 0
11 0 0
12 0 0
13 0 0
14 0 0
15 0 0

...
</pre>
<br>

=== Option -d===
====Case: d=(30, 5, 5), w=(180, 0, 0)====
<table>
<tr>
<td>[[File:Outdata-d-mrcImageRefCreate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-581.161 (19, 13, 3)<br>
36079.7 (23, 28, 5)<br>
4099.7<br>
5771.83<br>
30.8517<br></p>
</td>
</tr>
</table>
<br>

<div>z=0(Header) By [[mrcImageMakeDump]]</div>
<pre>
0 0 0
1 0 0
2 0 0
3 0 30
4 0 5
5 0 5
6 0 180
7 0 0
8 0 0
9 0 0
10 0 0
11 0 0
12 0 0
13 0 0
14 0 0
15 0 0

...
</pre>
<br>

=== Option -p===
====Case: p=(30, 0, 0), w=(30, 0, 0)====
<table>
<tr>
<td>[[File:Outdata-p-mrcImageRefCreate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-586.437 (45, 25, 4)<br>
42135.5 (31, 26, 12)<br>
4099.79<br>
5869.56<br>
31.3741<br></p>
</td>
</tr>
</table>
<br>

<div>z=0(Header) By [[mrcImageMakeDump]]</div>
<pre>
0 0 30
1 0 0
2 0 0
3 0 5
4 0 5
5 0 5
6 0 30
7 0 0
8 0 0
9 0 0
10 0 0
11 0 0
12 0 0
13 0 0
14 0 0
15 0 0

...
</pre>
<br>

=== Option -x===
====Case: x=30, w=(30, 0, 0)====
<table>
<tr>
<td>[[File:Outdata-x-mrcImageRefCreate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-618.193 (25, 39, 6)<br>
37724 (12, 29, 11)<br>
6170.05<br>
6385.51<br>
44.0642<br></p>
</td>
</tr>
</table>
<br>

<div>z=0(Header) By [[mrcImageMakeDump]]</div>
<pre>
0 0 0
1 0 0
2 0 0
3 0 5
4 0 5
5 0 5
6 0 30
7 0 0
8 0 0
9 0 0
10 0 0
11 0 0
12 0 0
13 0 0
14 0 0
15 0 0

...
</pre>
<br>

=== Option -m===
====Case: m=1, w=(0, 15, 0)====
<table>
<tr>
<td>[[File:Outdata-m-mrcImageRefCreate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-3757.87 (20, 0, 7)<br>
32675.7 (13, 17, 5)<br>
5959.8<br>
6481.03<br>
60.1748<br></p>
</td>
</tr>
</table>
<br>

<div>z=0(Header) By [[mrcImageMakeDump]]</div>
<pre>
0 0 0
1 0 0
2 0 0
3 0 5
4 0 5
5 0 5
6 0 0
7 0 15
8 0 0
9 0 0
10 0 0
11 0 0
12 0 0
13 0 0
14 0 0
15 0 0

...
</pre>
<br>