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mrcImageRotation3D - Revision history
2026-06-04T16:11:08Z
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Kinoshita: Created page with "'''mrcImageRotation3D''' is Eos's Command that rotates mrcImage(3D) at Euler Angle specified. == List of option == === Main option === <table border="1">..."
2014-07-30T05:11:38Z
<p>Created page with "'''mrcImageRotation3D''' is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>'s <a href="/Eos/index.php/Command" title="Command">Command</a> that rotates <a href="/Eos/index.php/mrcImage" title="mrcImage">mrcImage</a>(3D) at <a href="/Eos/index.php?title=Euler_Angle&action=edit&redlink=1" class="new" title="Euler Angle (page does not exist)">Euler Angle</a> specified. == List of option == === Main option === <table border="1">..."</p>
<p><b>New page</b></p><div>'''mrcImageRotation3D''' is [[Eos]]'s [[Command]] that rotates [[mrcImage]](3D) at [[Euler Angle]] specified.<br />
<br />
<br />
== List of option ==<br />
=== Main option ===<br />
<table border="1"><br />
<tr> <br />
<th>Option</th> <br />
<th>Essential/Optional</th> <br />
<th>Description</th> <br />
<th>Default</th> <br />
</tr> <br />
<tr> <br />
<td>-i</td> <br />
<td>Essential</td> <br />
<td>Input: [[mrcImage]](3D)</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-o</td> <br />
<td>Essential</td> <br />
<td>Output: [[mrcImage]](3D)</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-EA</td> <br />
<td>Optional</td> <br />
<td>Input: [[Euler Angle]] (Euler Angle, Rot1, Rot2, Rot3)</td> <br />
<td>(YOYS, 0.0, 0.0, 0.0)</td> <br />
</tr> <br />
<tr> <br />
<td>-c</td> <br />
<td>Optional</td> <br />
<td>ConfigurationFile</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-m</td> <br />
<td>Optional</td> <br />
<td>Mode</td> <br />
<td>0</td> <br />
</tr> <br />
<tr> <br />
<td>-M</td> <br />
<td>Optional</td> <br />
<td>InterpolationMode</td> <br />
<td>2</td> <br />
</tr> <br />
<tr> <br />
<td>-h</td> <br />
<td>Optional</td> <br />
<td>Help</td> <br />
<td> </td> <br />
</tr> <br />
</table> <br />
<br />
===-m details===<br />
<table border="1"><br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>0</td> <br />
<td>padding 0 </td> <br />
</tr> <br />
<tr> <br />
<td>1</td> <br />
<td>padding average</td> <br />
</tr> <br />
<tr> <br />
<td>+0</td> <br />
<td>within ellipsoidal area.</td> <br />
</tr> <br />
<tr> <br />
<td>+16</td> <br />
<td>within square area.</td> <br />
</tr> <br />
</table> <br />
<br />
<br />
== Execution example ==<br />
===[[Media:1VOM.mrc | Input file]] image===<br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Input-1VOM.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Input1-1VOM.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">0 (0, 0, 0)<br> <br />
3398.12 (23, 55, 41)<br> <br />
72.129<br> <br />
294.805<br> <br />
0.368507<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
=== Example of options only essential ===<br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-mrcImageRotation3D.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata1-mrcImageRotation3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">0 (0, 0, 0)<br> <br />
3398.12 (23, 55, 41)<br> <br />
65.7232<br> <br />
282.429<br> <br />
0.353036<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<div>No rotation only padding</div><br />
<br><br />
<br />
=== Option -EA===<br />
====Case: EA=(YOYS, 45, 0, 0)==== <br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-YOYS-45-0-0-mrcImageRotation3D.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata1-YOYS-45-0-0-mrcImageRotation3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-421.096 (36, 47, 63)<br> <br />
3336.89 (41, 42, 70)<br> <br />
65.6613<br> <br />
284.896<br> <br />
0.35612<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<div>Rotation at 45 degrees around y-axis</div><br />
<br><br />
<br />
====Case: EA=(YOYS, 0, 45, 0)==== <br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-YOYS-0-45-0-mrcImageRotation3D.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata1-YOYS-0-45-0-mrcImageRotation3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-395.248 (48, 46, 53)<br> <br />
3315.09 (41, 67, 51)<br> <br />
65.1894<br> <br />
284.142<br> <br />
0.355177<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<div>Rotation at 45 degrees around x-axis</div><br />
<br><br />
<br />
====Case: EA=(YOYS, 0, 0, 45)==== <br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-YOYS-0-0-45-mrcImageRotation3D.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata1-YOYS-0-0-45-mrcImageRotation3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-387.947 (27, 41, 51)<br> <br />
3353.96 (36, 15, 29)<br> <br />
65.7638<br> <br />
285.358<br> <br />
0.356698<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<div>Rotation at 45 degrees around z-axis</div><br />
<br><br />
<br />
====Case: EA=(YOYR, 45, 0, 0)==== <br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-YOYR-mrcImageRotation3D.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata1-YOYR-mrcImageRotation3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-387.947 (27, 41, 51)<br> <br />
3353.96 (36, 15, 29)<br> <br />
65.7638<br> <br />
285.358<br> <br />
0.356698<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<div>Axis-Rotation at 45 degrees around z-axis</div><br />
<br><br />
<br />
====Case: EA=(YOYR, 45, -30, 0)==== <br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-YOYR1-mrcImageRotation3D.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata1-YOYR1-mrcImageRotation3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-399.893 (19, 43, 27)<br> <br />
3541.64 (11, 36, 35)<br> <br />
65.7205<br> <br />
286.552<br> <br />
0.35819<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<div>Axis-Rotation at 45 degrees around z-axis, -30 degrees around x-axis</div><br />
<br><br />
<br />
====Case: EA=(YOYR, 45, -30, 45)==== <br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-YOYR2-mrcImageRotation3D.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata1-YOYR2-mrcImageRotation3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-455.691 (42, 57, 37)<br> <br />
3319.54 (21, 57, 25)<br> <br />
65.7217<br> <br />
286.63<br> <br />
0.358288<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<div>Axis-Rotation at 45 degrees around z-axis, -30 degrees around x-axis and 45 degrees around y-axis</div><br />
<br><br />
<br />
====Case: EA=(YEYR, 45, 0, 0)==== <br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-YEYR-mrcImageRotation3D.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata1-YEYR-mrcImageRotation3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-395.248 (48, 46, 53)<br> <br />
3315.09 (41, 67, 51)<br> <br />
65.1894<br> <br />
284.142<br> <br />
0.355177<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<div>Axis-Rotation at 45 degrees around y-axis</div><br />
<br><br />
<br />
=== Option -m===<br />
====Case: m=1, EA=(YOYS, 45, 0, 0)==== <br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-m1-YOYS-45-0-0-mrcImageRotation3D.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata1-m1-YOYS-45-0-0-mrcImageRotation3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-421.096 (36, 47, 63)<br> <br />
3336.89 (41, 42, 70)<br> <br />
101.927<br> <br />
278.754<br> <br />
0.348442<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
====Case: m=16, EA=(YOYS, 45, 0, 0)==== <br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-m16-YOYS-45-0-0-mrcImageRotation3D.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata1-m16-YOYS-45-0-0-mrcImageRotation3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-421.096 (36, 47, 63)<br> <br />
3336.89 (41, 42, 70)<br> <br />
77.9571<br> <br />
308.653<br> <br />
0.385816<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br></div>
Kinoshita