Kinoshita: Created page with "'''mrcImageShapePCA''' is Eos's Command for determine of the orientation of 3D image's shape. == Algorithm == 　It determines the orientation of 3D object's shape by..."

2014-07-31T00:38:22Z

Created page with "'''mrcImageShapePCA''' is Eos's Command for determine of the orientation of 3D image's shape. == Algorithm == 　It determines the orientation of 3D object's shape by..."

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'''mrcImageShapePCA''' is [[Eos]]'s [[Command]] for determine of the orientation of 3D image's shape.

== Algorithm ==
　It determines the orientation of 3D object's shape by using [[Principal Component Analysis]].

== List of option ==
=== Main option ===
<table border="1">
<div align="left">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Optional</td>
<td>Output: [[ASCII]]</td>
<td>stdout(Standard output by default）</td>
</tr>
<tr>
<td>-C</td>
<td>Optional</td>
<td>[[Variable]]: C1 C2... Ci: put each of points</td>
<td>0.0 ...</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</div>
</table>

=== -m details ===
<table border="1">
<div align="left">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</div>
</table>

== Execution example ==
===[[Media:Input-121P-70.mrc | Input file]] image===
<table>
<tr>
<td><p align="Center">[[File:Input-mrcImageShapePCA.png]]<br>
xy-plane<br></p>
</td>
<td><p align="Center">[[File:Input1-mrcImageShapePCA.png]]<br>
yz-plane<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
5 (35, 42, 36)<br>
0.00451895<br>
0.0913615<br>
0.000155997<br></p>
</td>
</tr>
</table>
<br>

=== Option -C===
====Case: C=0====
<pre>
# PCA ResultsConvariace Matrix: 2 3 3
14505.161133 198.588654 2422.490479
198.588654 14068.363281 -839.463379
2422.490479 -839.463379 13960.040039
UnitVector: one unit vector per line, from 1st 2 3 3
0.719602 -0.159090 0.675917
0.313963 0.942763 -0.112358
-0.619354 0.293066 0.728363
Lambda: 1st 2nd 3rd1 3
16736.683594 14234.544922 11562.336914
Average: 1 3
37.617535 45.253372 38.918110
</pre>
<br>

====Case: C=(0, 1, 2, 3, 4)====
<pre>
# PCA ResultsConvariace Matrix: 2 3 3
20669.468750 417.175446 3364.196045
417.175446 20182.199219 -1254.394897
3364.196045 -1254.394897 20143.558594
UnitVector: one unit vector per line, from 1st 2 3 3
0.706418 -0.155129 0.690586
0.333752 0.933412 -0.131727
-0.624166 0.323539 0.711153
Lambda: 1st 2nd 3rd1 3
23866.658203 20508.390625 16620.177734
Average: 1 3
37.495483 45.239353 38.885162
</pre>

mrcImageShapePCA - Revision history

Kinoshita: Created page with "'''mrcImageShapePCA''' is Eos's Command for determine of the orientation of 3D image's shape. == Algorithm == It determines the orientation of 3D object's shape by..."

Kinoshita: Created page with "'''mrcImageShapePCA''' is Eos's Command for determine of the orientation of 3D image's shape. == Algorithm == 　It determines the orientation of 3D object's shape by..."