mrcImageSinogramCorrelation - Revision history

Kinoshita: Created page with "'''mrcImageSinogramCorrelation''' is Eos's Command that performs Sinogram Correlation. == List of option == === Main option ===
2014-07-31T04:36:32Z

Created page with "'''mrcImageSinogramCorrelation''' is Eos's Command that performs Sinogram Correlation. == List of option == === Main option === <table border="1"> <tr> <th..."

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'''mrcImageSinogramCorrelation''' is [[Eos]]'s [[Command]] that performs Sinogram Correlation.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input設定: [[mrcImage]](Sinogram)</td>
<td>NULL</td>
</tr>
<tr>
<td>-r</td>
<td>Essential</td>
<td>Reference: [[mrcImage]](Sinogram)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-w</td>
<td>Optional</td>
<td>Weigth for Mode: 1(w0th, w1st, w2nd)</td>
<td>(1.0, 0.0, 0.0)</td>
</tr>
<tr>
<td>-T</td>
<td>Optional</td>
<td>threshold for Mode: 2</td>
<td>0.0</td>
</tr>
<tr>
<td>-LTR</td>
<td>Optional</td>
<td>ratio of threshold for LengthMode: 1</td>
<td>1.0</td>
</tr>
<tr>
<td>-LCT</td>
<td>Optional</td>
<td>Optional :threshold for LengthCorrelation</td>
<td>0.0</td>
</tr>
<tr>
<td>-wL</td>
<td>Optional</td>
<td>Weight for LengthCorrelation</td>
<td>1.0</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-LM</td>
<td>Optional</td>
<td>Length Mode: for LengthCorrelation</td>
<td>0</td>
</tr>
<tr>
<td>-LCM</td>
<td>Optional</td>
<td>Mode: for LengthCorrelationMode</td>
<td>0</td>
</tr>
<tr>
<td>-LTM</td>
<td>Optional</td>
<td>Length Threshold Mode: for LengthCorrelation</td>
<td>0</td>
</tr>
<tr>
<td>-M</td>
<td>Optional</td>
<td>Mode: for Correlation</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

===-m details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>simple Correlation</td>
</tr>
<tr>
<td>1</td>
<td>weight Correlation (addition to derivation)</td>
</tr>
<tr>
<td>2</td>
<td>threshold Correlation (addition to derivation)</td>
</tr>
<tr>
<td>3</td>
<td>power weight Correlation (addition to derivation : -LM=1 -LCM=2)</td>
</tr>
</table>

===-LM details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>without Length Correlation</td>
</tr>
<tr>
<td>1</td>
<td>addition to Length Correlation (-LCM)</td>
</tr>
</table>

===-LCM details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>weight (-wL , -LTM , -LTR)</td>
</tr>
<tr>
<td>1</td>
<td>threshold (-LTM , -LTR , -LCT)</td>
</tr>
<tr>
<td>2</td>
<td>power weight (-LTM , -LTR , -wL)</td>
</tr>
</table>

===-LTM details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>Multiply derivationMax and ratio(-LTR)</td>
</tr>
<tr>
<td>1</td>
<td>Average of all derivation </td>
</tr>
</table>
<br>

== Execution example ==
===[[Media:Input-B120-M-sin.mrc | Input file]] image===
<table>
<tr>
<td>[[File:Input-B120-M-sin.png]]</td>
<td><p align="center">[[File:Input-B120-M.png]]<br>
Before Sinogram Transformation<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
65535 (12, 1, 0)<br>
22776.7<br>
23232.9<br>
136.901<br></p>
</td>
</tr>
</table>
<br>

===[[Media:Input-B120-sin.mrc | Reference file]] image===
<table>
<tr>
<td>[[File:Input-B120-sin.png]]</td>
<td><p align="center">[[File:Input-B120.png]]<br>
Before Sinogram Transformation<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
65535 (77, 34, 0)<br>
22776.7<br>
23232.9<br>
136.901<br></p>
</td>
</tr>
</table>
<br>

=== Example of options only essential ===
<table>
<tr>
<td>[[File:Outdata-mrcImageSinogramCorrelation.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.876087 (197, 162, 0)<br>
1 (179, 1, 0)<br>
0.0891167<br>
0.276684<br>
0.000768567<br></p>
</td>
</tr>
</table>
<div>Input fileはReference fileの鏡像であるので、180度回転のところで相関値は1になる</div>
<br>

=== Option -LM===
====Case: LM=1====
=====Case: No other settings=====
<table>
<tr>
<td>[[File:Outdata-LM1-mrcImageSinogramCorrelation.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.820738 (267, 196, 0)<br>
2 (180, 0, 0)<br>
0.55432<br>
0.524071<br>
0.00145575<br></p>
</td>
</tr>
</table>
<br>

=====Case: LTR=0.5=====
<table>
<tr>
<td>[[File:Outdata-LM1LTR-mrcImageSinogramCorrelation.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.0534014 (297, 316, 0)<br>
2 (180, 0, 0)<br>
0.993997<br>
0.295261<br>
0.000820169<br></p>
</td>
</tr>
</table>
<br>

=====Case: wL=2=====
<table>
<tr>
<td>[[File:Outdata-LM1wL-mrcImageSinogramCorrelation.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.787405 (267, 196, 0)<br>
3 (180, 0, 0)<br>
1.01952<br>
0.928614<br>
0.00257948<br></p>
</td>
</tr>
</table>
<br>

=== Option -LCM===
====Case: LCM=1, LM=1====
=====Case: No other settings=====
<table>
<tr>
<td>[[File:Outdata-LCM1-mrcImageSinogramCorrelation.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.876087 (197, 162, 0)<br>
1 (179, 1, 0)<br>
0.0431111<br>
0.18601<br>
0.000516696<br></p>
</td>
</tr>
</table>
<br>

=====Case: LTR=0.5=====
<table>
<tr>
<td>[[File:Outdata-LCM1LTR-mrcImageSinogramCorrelation.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-0.876087 (197, 162, 0)<br>
1 (179, 1, 0)<br>
0.0832207<br>
0.253434<br>
0.000703982<br></p>
</td>
</tr>
</table>
<br>

====Case: LCM=2, LM=1, LTM=1====
=====Case: No other settings=====
<table>
<tr>
<td>[[File:Outdata-LCM2-mrcImageSinogramCorrelation.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0.352012 (197, 162, 0)<br>
1.41421 (180, 0, 0)<br>
1.03461<br>
0.136719<br>
0.000379775<br></p>
</td>
</tr>
</table>
<br>

=====Case: w=(1.0, 0.5, 0)=====
<table>
<tr>
<td>[[File:Outdata-LCM2w-mrcImageSinogramCorrelation.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0.433757 (197, 162, 0)<br>
1.31951 (179, 1, 0)<br>
1.02611<br>
0.109535<br>
0.000304265<br></p>
</td>
</tr>
</table>
<br>

=== Option -LTM===
====Case: LTM=1, LM=1====
=====Case: No other settings=====
<table>
<tr>
<td>[[File:Outdata-LTM1-mrcImageSinogramCorrelation.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0.123913 (197, 162, 0)<br>
2 (180, 0, 0)<br>
1.08912<br>
0.276684<br>
0.000768567<br></p>
</td>
</tr>
</table>
<br>

=====Case: wL=2=====
<table>
<tr>
<td>[[File:Outdata-LTM1wL-mrcImageSinogramCorrelation.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">1.12391 (197, 162, 0)<br>
3 (180, 0, 0)<br>
2.08912<br>
0.276684<br>
0.000768567<br></p>
</td>
</tr>
</table>
<br>

=== Option -m===
====Case: m=3, LCM=2, LM=1, LTM=1====
=====Case: No other settings=====
<table>
<tr>
<td>[[File:Outdata-m3-mrcImageSinogramCorrelation.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0.352012 (197, 162, 0)<br>
1.41421 (180, 0, 0)<br>
1.03461<br>
0.136719<br>
0.000379775<br></p>
</td>
</tr>
</table>

=====Case: w=(2, 0, 0)=====
<table>
<tr>
<td>[[File:Outdata-m3w-mrcImageSinogramCorrelation.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">1 (310, 0, 0)<br>
1.25992 (180, 0, 0)<br>
1.0262<br>
0.0346682<br>
9.63005e-05<br></p>
</td>
</tr>
</table>