mrcImageSpatialFrequencyFilter - Revision history

Kinoshita at 00:59, 29 October 2014

2014-10-29T00:59:05Z

Kinoshita at 00:52, 29 October 2014

2014-10-29T00:52:35Z

Kinoshita: /* Execution example */

2014-10-29T00:25:15Z

‎Execution example

Show changes

Kinoshita: Created page with "'''mrcImageSpatialFrequencyFilter''' is Eos's Command that that filters depending on the weight for each set spatial frequency. == List of option == === Main option..."

2014-10-27T04:13:50Z

Created page with "'''mrcImageSpatialFrequencyFilter''' is Eos's Command that that filters depending on the weight for each set spatial frequency. == List of option == === Main option..."

New page

'''mrcImageSpatialFrequencyFilter''' is [[Eos]]'s [[Command]] that that filters depending on the weight for each set spatial frequency.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-filter</td>
<td>Essential</td>
<td>Input: Filter file: [[ASCII]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-filterCol</td>
<td>Optional</td>
<td>Filter Column: (R, W)</td>
<td>(1, 2)</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[ASCII]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-L</td>
<td>Optional</td>
<td>LowCut: [/A]</td>
<td>-0.1</td>
</tr>
<tr>
<td>-H</td>
<td>Optional</td>
<td>HighCut: [/A]</td>
<td>1.0</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<br>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>
<br>

== Execution example ==

@@ Line 329: / Line 329: @@
 === Example3 about -filter, -filterCol ===
-Rに応じた重みを計算したFilterfileで実行する.<br>
+Use the filter file whose weight is calculated by using R.<br>
 <br>
 -filter のfile
@@ Line 345: / Line 345: @@
 .000000	0	0	0	0	0	0	0	0	0	0	0
 </pre>
-このfileの重みはW=(1-R)^n: (n=列)で算出している.
+Weight in this file is calculated as W=(1-R)^n: (n=column).
 <br>
-==== その他Optionなしで実行 ====
+==== Case: No other settings ====
-下記のSettingとCommandにより,Makefileからでも実行できる.<br>
+In the case of using Makefile, the following setting and command are required.<br>
 Setting<br>
 <pre>
@@ Line 369: / Line 369: @@
 			</td>
 			<td><p align="Center">[[File:Outdata2-filter3-mrcImageSpatialFrequencyFilter.png]]<br>
-				FFT画像<br></p>
+				FFT<br></p>
 			</td>
 			<td><p align="left">Min<br>
@@ Line 385: / Line 385: @@
 		</tr>
 	</table>
--filterColはデフォルトではR=1, W=2として実行される.<br>
+-filterCol is set as R=1, W=2 by default setting.<br>
 <br>
-==== filterCol=(1, 3)で実行 ====
+==== Case: filterCol=(1, 3) ====
-Makefileを使用する場合は下記のSetting変更を行うと実行できる.<br>
+In the case of using Makefile, the following setting is required.<br>
 <pre>
 # -filterCol
@@ Line 404: / Line 404: @@
 			</td>
 			<td><p align="Center">[[File:Outdata2-filterCol3-mrcImageSpatialFrequencyFilter.png]]<br>
-				FFT画像<br></p>
+				FFT<br></p>
 			</td>
 			<td><p align="left">Min<br>

@@ Line 199: / Line 199: @@
 ==== Case: H=0.105469 ====
-Filterfileにおいて,FSCが0.5を上回りSN比が3であるR=0.105469を基準にして実行する.<br>
+Execute the command setting the -H as R=0.105469. (FSC is more than 0.5, and SN ratio is about 3.)<br>
 <br>
-Makefileを使用する場合は下記のSettingを変更すると実行できる.<br>
+In the case of using Makefile, the following setting is required.<br>
 <pre>
 # -H
@@ Line 215: / Line 215: @@
 			</td>
 			<td><p align="Center">[[File:Outdata1-H-mrcImageSpatialFrequencyFilter-FFT.png]]<br>
-				FFT画像<br></p>
+				FFT<br></p>
 			</td>
 			<td><p align="left">Min<br>
@@ Line 231: / Line 231: @@
 		</tr>
 	</table>
-Input fileに対して周辺のNoiseが軽減され,重みの大きいFrequency成分が強調される.<br>
+The noise is reduced, and the frequency component which has large weight is emphasized.<br>
 <br>
-=== -filter, -filterCol の実行Example2 ===
+=== Example2 about -filter, -filterCol ===
-FilterfileはfilterColを元に読み出し列を決めることができるので,下記のように好きな成分にFilterを掛けることができる.<br>
+filterCol makes possible to select reading columns in filter file, so you can filter to required components as the following.<br>
 <br>
--filter のfile
+-filter 's file
 <pre>
 	1	1	1	1	1	1	1	1	1	1	1
@@ Line 254: / Line 254: @@
 <br>
-==== その他Optionなしで実行 ====
+==== Case: No other settings ====
-下記のSettingとCommandにより,Makefileからでも実行できる.<br>
+In the case of using Makefile, the following setting and command are required.<br>
 Setting<br>
 <pre>
@@ Line 275: / Line 275: @@
 			</td>
 			<td><p align="Center">[[File:Outdata1-filter2-mrcImageSpatialFrequencyFilter-FFT.png]]<br>
-				FFT画像<br></p>
+				FFT<br></p>
 			</td>
 			<td><p align="left">Min<br>
@@ Line 291: / Line 291: @@
 		</tr>
 	</table>
--filterColはデフォルトではR=1, W=2として実行される.<br>
+-filterCol is set as R=1, W=2 by default setting.<br>
 <br>
-==== filterCol=(1, 3)で実行 ====
+==== Case: filterCol=(1, 3) ====
-Makefileを使用する場合は下記のSetting変更を行うと実行できる.<br>
+In the case of using Makefile, the following setting is required.<br>
 <pre>
 # -filterCol
@@ Line 310: / Line 310: @@
 			</td>
 			<td><p align="Center">[[File:Outdata1-filterCol-mrcImageSpatialFrequencyFilter-FFT.png]]<br>
-				FFT画像<br></p>
+				FFT<br></p>
 			</td>
 			<td><p align="left">Min<br>
@@ Line 328: / Line 328: @@
 <br>
-=== -filter, -filterCol の実行Example3 ===
+=== Example3 about -filter, -filterCol ===
 Rに応じた重みを計算したFilterfileで実行する.<br>
 <br>