mrcImageTTest - Revision history

Kinoshita: Created page with "'''mrcImageTTest''' is Eos's Command that performs t-test between images. == List of option == === Main option === ..."
2014-08-04T01:04:38Z
Created page with "'''mrcImageTTest''' is Eos's Command that performs t-test between images. == List of option == === Main option === <table border="1"> <tr> <th>Option</th>..."
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'''mrcImageTTest''' is [[Eos]]'s [[Command]] that performs t-test between images.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Optional</td>
<td>Input: [[ASCII]](File List)</td>
<td>NULL</td>
</tr>
<tr>
<td>-I</td>
<td>Optional</td>
<td>Input: ([[mrcImage]](Average), [[mrcImage]](Variance), N)</td>
<td>(NULL, NULL, 0)</td>
</tr>
<tr>
<td>-Nor</td>
<td>Optional</td>
<td>Input: NormalizingParameter: A + Bx: (A, B)</td>
<td>(0.0, 1.0)</td>
</tr>
<tr>
<td>-r</td>
<td>Optional</td>
<td>Reference: [[ASCII]](File List)</td>
<td>NULL</td>
</tr>
<tr>
<td>-R</td>
<td>Optional</td>
<td>Reference: ([[mrcImage]](Average), [[mrcImage]](Variance), N)</td>
<td>(NULL, NULL, 0)</td>
</tr>
<tr>
<td>-NorR</td>
<td>Optional</td>
<td>Reference:NormalizingParameter: A + Bx: (A, B)</td>
<td>(0.0, 1.0)</td>
</tr>
<tr>
<td>-o</td>
<td>Optional</td>
<td>Output: Probability</td>
<td>NULL</td>
</tr>
<tr>
<td>-t</td>
<td>Optional</td>
<td>Output: t-value</td>
<td>NULL</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<div>-i or -I is required for Input file, and -r or -R is required for Reference file.<br>
Average, Variance file of -I, -R is created by [[mrcImageSN]].</div>
<br>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>
<br>

===-i, -r format===
<pre>
File1
File2
.
.

</pre>
<br>

== Execution example ==
===-i data===
<pre>
Input-1VOM-N-2D.mrc
Input-1VOM-N-Rot-2D.mrc
Input-1VOM-N-Rot1-2D.mrc

</pre>

<div>[[Media:Input-1VOM-N-2D.mrc|Input-1VOM-N-2D.mrc]]'s image</div>
<table>
<tr>
<td>[[File:Input-1VOM-N-2D.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-18651.7 (10, 1, 0)<br>
52942.7 (24, 39, 0)<br>
7214.87<br>
10067.6<br>
125.845<br></p>
</td>
</tr>
</table>

<div>[[Media:Input-1VOM-N-Rot-2D.mrc|Input-1VOM-N-Rot-2D.mrc]]'s image</div>
<table>
<tr>
<td>[[File:Input-1VOM-N-Rot-2D.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-11367.8 (51, 62, 0)<br>
51939.8 (29, 26, 0)<br>
6580.18<br>
9247.8<br>
115.597<br></p>
</td>
</tr>
</table>

<div>[[:Media:Input-1VOM-N-Rot1-2D.mrc|Input-1VOM-N-Rot1-2D.mrc]]'s image</div>
<table>
<tr>
<td>[[File:Input-1VOM-N-Rot1-2D.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-14918 (53, 17, 0)<br>
58621.8 (30, 26, 0)<br>
6579.96<br>
9022.72<br>
112.784<br></p>
</td>
</tr>
</table>
<br>

===-I data===
<div>Input: I=(Input-1VOM-N-2D-A.mrc, Input-1VOM-N-2D-Var.mrc, 3)</div>

<div>[[Media:Input-1VOM-N-2D-A.mrc|Input-1VOM-N-2D-A.mrc]]'s image(-i file's average)</div>
<table>
<tr>
<td>[[File:Input-1VOM-N-2D-A.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-7385.85 (61, 29, 0)<br>
41209.8 (29, 26, 0)<br>
6791.67<br>
8335.26<br>
104.191<br></p>
</td>
</tr>
</table>

<div>[[Media:Input-1VOM-N-2D-Var.mrc|Input-1VOM-N-2D-Var.mrc]]'s image(-i file's variance)</div>
<table>
<tr>
<td>[[File:Input-1VOM-N-2D-Var.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">62.2022 (11, 5, 0)<br>
5.06054e+08 (45, 28, 0)<br>
3.00629e+07<br>
4.18721e+07<br>
523402<br></p>
</td>
</tr>
</table>
<br>

===-r data===
<pre>
Input-1VOM-2D.mrc
Input-1VOM-Rot-2D.mrc
Input-1VOM-Rot1-2D.mrc

</pre>

<div>[[:Media:Input-1VOM-2D.mrc|Input-1VOM-2D.mrc]]'s image</div>
<table>
<tr>
<td>[[File:Input-1VOM-2D.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
49749.7 (27, 28, 0)<br>
7212.9<br>
8827.15<br>
110.339<br></p>
</td>
</tr>
</table>

<div>[[:Media:Input-1VOM-Rot-2D.mrc|Input-1VOM-Rot-2D.mrc]]'s image</div>
<table>
<tr>
<td>[[File:Input-1VOM-Rot-2D.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-609.552 (68, 18, 0)<br>
43476 (45, 47, 0)<br>
6507.15<br>
7376.01<br>
92.2001<br></p>
</td>
</tr>
</table>

<div>[[:Media:Input-1VOM-Rot1-2D.mrc|Input-1VOM-Rot1-2D.mrc]]'s image</div>
<table>
<tr>
<td>[[File:Input-1VOM-Rot1-2D.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-2.31309e-06 (29, 7, 0)<br>
49749.2 (52, 51, 0)<br>
6572.32<br>
8769.91<br>
109.624<br></p>
</td>
</tr>
</table>
<br>

===-R data===
<div>Input: I=(Input-1VOM-2D-A.mrc, Input-1VOM-2D-Var.mrc, 3)</div>

<div>[[Media:Input-1VOM-2D-A.mrc|Input-1VOM-2D-A.mrc]]'s image(-r file's average)</div>
<table>
<tr>
<td>[[File:Input-1VOM-2D-A.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-145.807 (2, 45, 0)<br>
31890.8 (45, 47, 0)<br>
6764.13<br>
6642.45<br>
83.0307<br></p>
</td>
</tr>
</table>

<div>[[Media:Input-1VOM-2D-Var.mrc|Input-1VOM-2D-Var.mrc]]'s image(-r file's variance)</div>
<table>
<tr>
<td>[[File:Input-1VOM-2D-Var.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
7.26565e+08 (27, 28, 0)<br>
3.85865e+07<br>
5.61164e+07<br>
701454<br></p>
</td>
</tr>
</table>
<br>

=== Example of options only essential ===
====Case: -i, -r====
<div>-o 's image</div>
<table>
<tr>
<td>[[File:Outdata-mrcImageTTest.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-99.9368 (45, 3, 0)<br>
99.9301 (76, 50, 0)<br>
-1.29958<br>
58.3662<br>
0.729578<br></p>
</td>
</tr>
</table>
<br>

<div>-t 's image</div>
<table>
<tr>
<td>[[File:Outdata1-mrcImageTTest.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-13.383 (30, 3, 0)<br>
30.6481 (76, 50, 0)<br>
-0.00954761<br>
1.39399<br>
0.0174249<br></p>
</td>
</tr>
</table>
<br>

====Case: -I, -R====
<div>It is the same output as the -i, -r.</div>
<br>

<div>-o 's image</div>
<table>
<tr>
<td>[[File:Outdata2-mrcImageTTest.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-99.9368 (45, 3, 0)<br>
99.9301 (76, 50, 0)<br>
-1.29958<br>
58.3662<br>
0.729578<br></p>
</td>
</tr>
</table>
<br>

<div>-t 's image</div>
<table>
<tr>
<td>[[File:Outdata3-mrcImageTTest.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-13.383 (30, 3, 0)<br>
30.6481 (76, 50, 0)<br>
-0.00954761<br>
1.39399<br>
0.0174249<br></p>
</td>
</tr>
</table>
<br>

<div>In the following, Setting at -I, -R</div>

=== Option -Nor===
====Case: Nor=(0, 0.4)====
<div>-o 's image</div>
<table>
<tr>
<td>[[File:Outdata-Nor-mrcImageTTest.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-99.9762 (46, 37, 0)<br>
99.9871 (76, 50, 0)<br>
-42.9433<br>
49.5383<br>
0.619228<br></p>
</td>
</tr>
</table>
<br>

<div>-t 's image</div>
<table>
<tr>
<td>[[File:Outdata1-Nor-mrcImageTTest.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-13.9446 (39, 40, 0)<br>
27.7973 (76, 50, 0)<br>
-1.06447<br>
1.61062<br>
0.0201327<br></p>
</td>
</tr>
</table>
<br>

=== Option -NorR===
====Case: NorR=(0, 0.4)====
<div>-o 's image</div>
<table>
<tr>
<td>[[File:Outdata-NorR-mrcImageTTest.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-99.819 (45, 3, 0)<br>
99.9888 (30, 32, 0)<br>
32.2003<br>
59.6772<br>
0.745965<br></p>
</td>
</tr>
</table>
<br>

<div>-t 's image</div>
<table>
<tr>
<td>[[File:Outdata1-NorR-mrcImageTTest.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-13.383 (30, 3, 0)<br>
31.1071 (76, 50, 0)<br>
1.00935<br>
1.92418<br>
0.0240522<br></p>
</td>
</tr>
</table>
<br>

Option