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2026-05-04T15:34:38Z
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Kinoshita: Created page with "'''mrcImageTfunction''' is Eos's Command that calculates t-distribution of mrcImage. == List of option == === Main option === <table border="1"> <tr> <..."
2014-08-04T01:23:52Z
<p>Created page with "'''mrcImageTfunction''' is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>'s <a href="/Eos/index.php/Command" title="Command">Command</a> that calculates t-distribution of <a href="/Eos/index.php/mrcImage" title="mrcImage">mrcImage</a>. == List of option == === Main option === <table border="1"> <tr> <..."</p>
<p><b>New page</b></p><div>'''mrcImageTfunction''' is [[Eos]]'s [[Command]] that calculates t-distribution of [[mrcImage]].<br />
<br />
<br />
== List of option ==<br />
=== Main option ===<br />
<table border="1"><br />
<tr> <br />
<th>Option</th> <br />
<th>Essential/Optional</th> <br />
<th>Description</th> <br />
<th>Default</th> <br />
</tr> <br />
<tr> <br />
<td>-i</td> <br />
<td>Essential</td> <br />
<td>Input: [[mrcImage]]</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-o</td> <br />
<td>Essential</td> <br />
<td>Output: [[mrcImage]]</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-sx</td> <br />
<td>Optional</td> <br />
<td>x of Kernel Size</td> <br />
<td>25</td> <br />
</tr> <br />
<tr> <br />
<td>-sy</td> <br />
<td>Optional</td> <br />
<td>y of Kernel Size</td> <br />
<td>25</td> <br />
</tr> <br />
<tr> <br />
<td>-sz</td> <br />
<td>Optional</td> <br />
<td>z of Kernel Size</td> <br />
<td>1</td> <br />
</tr> <br />
<tr> <br />
<td>-c</td> <br />
<td>Optional</td> <br />
<td>ConfigurationFile</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-h</td> <br />
<td>Optional</td> <br />
<td>Help</td> <br />
<td> </td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
=== -m details ===<br />
<table border="1"><br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>0</td> <br />
<td></td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
== Execution example ==<br />
===[[Media:Input-1VOM-N-2D.mrc|Input file]](2D)===<br />
<table> <br />
<tr> <br />
<td>[[File:Input-1VOM-N-2D.png]]</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-18651.7 (10, 1, 0)<br> <br />
52942.7 (24, 39, 0)<br> <br />
7214.87<br> <br />
10067.6<br> <br />
125.845<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br><br />
<br />
==== Example of options only essential ====<br />
<table> <br />
<tr> <br />
<td>[[File:Outdata-mrcImageTfunction.png]]</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-1.64858 (78, 37, 0)<br> <br />
1.86762 (28, 35, 0)<br> <br />
-0.121833<br> <br />
0.826501<br> <br />
0.0103313<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
====Case: sx=9, sy=9==== <br />
<table> <br />
<tr> <br />
<td>[[File:Outdata-sxsy-mrcImageTfunction.png]]</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-1.73416 (78, 36, 0)<br> <br />
2.27562 (27, 35, 0)<br> <br />
-0.177047<br> <br />
1.0253<br> <br />
0.0128163<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
===[[Media:Input-1VOM-N.mrc | Input file]](3D)===<br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Input-1VOM-N.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Input1-1VOM-N.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-2390.42 (77, 14, 69)<br> <br />
4374.62 (17, 62, 46)<br> <br />
72.1487<br> <br />
577.82<br> <br />
0.722275<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
==== Example of options only essential ====<br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata0-mrcImageTfunction.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata1-mrcImageTfunction.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-0.402378 (45, 3, 83)<br> <br />
0.554883 (33, 77, 41)<br> <br />
-0.0215917<br> <br />
0.173126<br> <br />
0.000216408<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
====Case: sz=9==== <br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-sz-mrcImageTfunction.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata1-sz-mrcImageTfunction.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-0.229394 (1, 0, 40)<br> <br />
0.452801 (30, 51, 50)<br> <br />
-0.0198992<br> <br />
0.163574<br> <br />
0.000204468<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br></div>
Kinoshita