mrcImageTiltAxisSearchHelp - Revision history

Kinoshita: Created page with "'''mrcImageTiltAxisSearchHelp''' is Eos's Command. == List of option == === Main option ===

Option Essential/Opti..."
2014-08-04T02:20:16Z

Created page with "'''mrcImageTiltAxisSearchHelp''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essential/Opti..."

New page
'''mrcImageTiltAxisSearchHelp''' is [[Eos]]'s [[Command]].

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-I</td>
<td>Essential</td>
<td>Input: [[ASCII]] (File List)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o1d</td>
<td>Optional</td>
<td>Output: [[mrcImage]](1D)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o1de</td>
<td>Optional</td>
<td>Output: [[mrcImage]](1DEnlarged)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o2d</td>
<td>Optional</td>
<td>Output: [[mrcImage]](2D)</td>
<td>NULL</td>
</tr>
<tr>
<td>-aP</td>
<td>Optional</td>
<td>Input: AxisPosition: (OriginX, OriginY, OriginZ)</td>
<td>(0.0, 0.0, 0.0)</td>
</tr>
<tr>
<td>-a</td>
<td>Optional</td>
<td>Input: AxisAngleYaw/Pitch[degree](AxisAngleYaw , AxisAnglePitch)</td>
<td>(0.0, 0.0)</td>
</tr>
<tr>
<td>-R</td>
<td>Optional</td>
<td>Input: LowPathFiltering(Rmin, Rmax)</td>
<td>(0.05, 0.1)</td>
</tr>
<tr>
<td>-Interp</td>
<td>Optional</td>
<td>Input: InterpolationMode</td>
<td>2</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>

===Input file list format===
<pre>
filename tiltAngle[degree] relativeTiltAxisYaw[degree] relativeTiltAxisPitch[degree] relativePosX[pixel] relativePosY[pixel] relativePosZ[pixel]
</pre>

== Execution example ==
===Input file's data===
<div>-i 's data</div>
<pre>
/Eos/img/Input.mrc 45 45 0 35 35 0

</pre>

<div>Input.mrc 's image</div>
<table>
<tr>
<td>[[File:Input-mrcImageTiltAxisSearch.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
65535 (49, 32, 0)<br>
5410.81<br>
12251.4<br>
153.143<br></p>
</td>
</tr>
</table>

=== Example of options only essential ===
====-o1d image====
<table>
<tr>
<td>[[File:Outdata2-mrcImageTiltAxisSearchHelp.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-57.1324 (60, 0, 0)<br>
53955.1 (39, 0, 0)<br>
15702.1<br>
17807.4<br>
1990.93<br></p>
</td>
</tr>
</table>

====-o1de image====
<table>
<tr>
<td>[[File:Outdata3-mrcImageTiltAxisSearchHelp.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-110.257 (63, 0, 0)<br>
53729.6 (39, 0, 0)<br>
18143.8<br>
17959.2<br>
2007.9<br></p>
</td>
</tr>
</table>

====-o2d image====
<table>
<tr>
<td>[[File:Outdata-mrcImageTiltAxisSearchHelp.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-251.342 (75, 32, 0)<br>
53881.2 (78, 0, 0)<br>
19043.4<br>
18687.1<br>
233.589<br></p>
</td>
</tr>
</table>

=== Option -aP===
====Case: aP=(0.2, 0.4, 0)====
=====-o1d image=====
<table>
<tr>
<td>[[File:Outdata2-aP-mrcImageTiltAxisSearchHelp.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-106.416 (60, 0, 0)<br>
51712.2 (39, 0, 0)<br>
16012.3<br>
17809.6<br>
1991.18<br></p>
</td>
</tr>
</table>

=====-o1de image=====
<table>
<tr>
<td>[[File:Outdata3-aP-mrcImageTiltAxisSearchHelp.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-134.835 (63, 0, 0)<br>
51598.4 (41, 0, 0)<br>
18498<br>
17904.5<br>
2001.78<br></p>
</td>
</tr>
</table>

=====-o2d image=====
<table>
<tr>
<td>[[File:Outdata-aP-mrcImageTiltAxisSearchHelp.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-266.286 (52, 55, 0)<br>
51448.8 (74, 7, 0)<br>
19320.6<br>
18594.9<br>
232.436<br></p>
</td>
</tr>
</table>

=== Option -a===
====Case: a=(0.2, 0.8)====
=====-o1d image=====
<table>
<tr>
<td>[[File:Outdata2-a-mrcImageTiltAxisSearchHelp.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-118.858 (8, 0, 0)<br>
59400.1 (32, 0, 0)<br>
17676.5<br>
18991.8<br>
2123.34<br></p>
</td>
</tr>
</table>

=====-o1de image=====
<table>
<tr>
<td>[[File:Outdata3-a-mrcImageTiltAxisSearchHelp.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-59.9404 (73, 0, 0)<br>
59851.4 (27, 0, 0)<br>
28866.2<br>
17322.5<br>
1936.71<br></p>
</td>
</tr>
</table>

=====-o2d image=====
<table>
<tr>
<td>[[File:Outdata-a-mrcImageTiltAxisSearchHelp.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-183.744 (35, 0, 0)<br>
60837.2 (68, 1, 0)<br>
20601.8<br>
19509.2<br>
243.865<br></p>
</td>
</tr>
</table>

=== Option -Interp===
====Case: Interp=3====
=====-o1d image=====
<table>
<tr>
<td>[[File:Outdata2-Interp-mrcImageTiltAxisSearchHelp.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-2669.23 (60, 0, 0)<br>
3.71077e+07 (40, 0, 0)<br>
1.16912e+07<br>
1.3051e+07<br>
1.45915e+06<br></p>
</td>
</tr>
</table>

=====-o1de image=====
<table>
<tr>
<td>[[File:Outdata3-Interp-mrcImageTiltAxisSearchHelp.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-3385.51 (63, 0, 0)<br>
3.7112e+07 (40, 0, 0)<br>
1.34889e+07<br>
1.31573e+07<br>
1.47104e+06<br></p>
</td>
</tr>
</table>

=====-o2d image=====
<table>
<tr>
<td>[[File:Outdata-Interp-mrcImageTiltAxisSearchHelp.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-2.52088e+06 (49, 60, 0)<br>
1.06573e+10 (71, 10, 0)<br>
3.75889e+09<br>
4.07181e+09<br>
5.08976e+07<br></p>
</td>
</tr>
</table>