mrcImageToPointsSet - Revision history

Kinoshita: Created page with "'''mrcImageToPointsSet''' is Eos's Command that outputs the coord whose value is above constant. == List of option == === Main option ===
2014-08-04T02:43:35Z

Created page with "'''mrcImageToPointsSet''' is Eos's Command that outputs the coord whose value is above constant. == List of option == === Main option === <table border="1"> <tr..."

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'''mrcImageToPointsSet''' is [[Eos]]'s [[Command]] that outputs the coord whose value is above constant.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Optional</td>
<td>Output: [[ASCII]] (Coord Set)</td>
<td>stdout</td>
</tr>
<tr>
<td>-t</td>
<td>Optional</td>
<td>Input: threshold</td>
<td>0.0</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<br>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>
<br>

===Output file format===
<pre>
x0 y0 z0
x1 y1 z1
.
.

</pre>
<div>Coord: N * pixel</div>
<br>

== Execution example ==
===[[Media:Input-B120.mrc | Input file]] image===
<table>
<tr>
<td>[[File:Input-B120.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
255 (49, 32, 0)<br>
21.0538<br>
47.6709<br>
0.595886<br></p>
</td>
</tr>
</table>
<br>

=== Example of options only essential ===
<pre>
0.000000, 0.000000, 0.000000
2.500000, 0.000000, 0.000000
5.000000, 0.000000, 0.000000
7.500000, 0.000000, 0.000000
10.000000, 0.000000, 0.000000
12.500000, 0.000000, 0.000000
15.000000, 0.000000, 0.000000
17.500000, 0.000000, 0.000000
20.000000, 0.000000, 0.000000

...

170.000000, 197.500000, 0.000000
172.500000, 197.500000, 0.000000
175.000000, 197.500000, 0.000000
177.500000, 197.500000, 0.000000
180.000000, 197.500000, 0.000000
182.500000, 197.500000, 0.000000
185.000000, 197.500000, 0.000000
187.500000, 197.500000, 0.000000
190.000000, 197.500000, 0.000000
192.500000, 197.500000, 0.000000
195.000000, 197.500000, 0.000000
197.500000, 197.500000, 0.000000
</pre>

=== Option -t===
====Case: t=255====
<pre>
122.500000, 80.000000, 0.000000
</pre>
<br>