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mrcImageTrans - Revision history
2026-05-15T04:31:42Z
Revision history for this page on the wiki
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http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcImageTrans&diff=3292&oldid=prev
Kinoshita: /* 30° rotation around the Z-axis + Parallel shift(x+20, y+20, z+20) */
2014-08-18T01:38:41Z
<p><span dir="auto"><span class="autocomment">30° rotation around the Z-axis + Parallel shift(x+20, y+20, z+20)</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 01:38, 18 August 2014</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>====30° rotation around the Z-axis + <del class="diffchange diffchange-inline">Parallel shift</del>(x+20, y+20, z+20)====</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>====30° rotation around the Z-axis + <ins class="diffchange diffchange-inline">parallel transformation </ins>(x+20, y+20, z+20)====</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div><div>-M 's data</div></div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div><div>-M 's data</div></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div><pre></div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div><pre></div></td></tr>
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Kinoshita
http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcImageTrans&diff=2606&oldid=prev
Kinoshita: Created page with "'''mrcImageTrans''' is Eos's Command that performs move, rotation of an image by using 4x4 matrix. == List of option == === Main option === <table border="1"> <..."
2014-08-04T02:51:23Z
<p>Created page with "'''mrcImageTrans''' is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>'s <a href="/Eos/index.php/Command" title="Command">Command</a> that performs move, rotation of an image by using 4x4 matrix. == List of option == === Main option === <table border="1"> <..."</p>
<p><b>New page</b></p><div>'''mrcImageTrans''' is [[Eos]]'s [[Command]] that performs move, rotation of an image by using 4x4 matrix.<br />
<br />
<br />
== List of option ==<br />
=== Main option ===<br />
<table border="1"><br />
<tr> <br />
<th>Option</th> <br />
<th>Essential/Optional</th> <br />
<th>Description</th> <br />
<th>Default</th> <br />
</tr> <br />
<tr> <br />
<td>-i</td> <br />
<td>Essential</td> <br />
<td>Input: [[mrcImage]](3D)</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-o</td> <br />
<td>Essential</td> <br />
<td>Output: [[mrcImage]](3D)</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-M</td> <br />
<td>Essential</td> <br />
<td>Input: [[ASCII]](4x4 matrix)</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-c</td> <br />
<td>Optional</td> <br />
<td>ConfigurationFile</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-m</td> <br />
<td>Optional</td> <br />
<td>[[Interpolation]]のMode</td> <br />
<td>0</td> <br />
</tr> <br />
<tr> <br />
<td>-h</td> <br />
<td>Optional</td> <br />
<td>Help</td> <br />
<td> </td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
=== -m details ===<br />
Setting [[Interpolation]] method.<br />
<table border="1"> <br />
<div align="left"> <br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>0</td> <br />
<td>Nearest neighbor method</td> <br />
</tr> <br />
<tr> <br />
<td>1</td> <br />
<td>Bi-linear interpolation method</td> <br />
</tr> <br />
<tr> <br />
<td>2</td> <br />
<td>Cubic convolution method</td> <br />
</tr> <br />
<tr> <br />
<td>3</td> <br />
<td>Polynomial interpolation method</td> <br />
</tr> <br />
</div> <br />
</table><br />
<br><br />
<br />
===-M format===<br />
<pre><br />
data(0, 0) data(0, 1) data(0, 2) data(0, 3)<br />
data(1, 0) data(1, 1) data(1, 2) data(1, 3)<br />
data(2, 0) data(2, 1) data(2, 2) data(2, 3)<br />
data(3, 0) data(3, 1) data(3, 2) data(3, 3)<br />
</pre><br />
<div>It can be created by [[matrix3DFromEulerAngle]].</div><br />
<br><br />
<br />
== Execution example ==<br />
===Input file's data===<br />
====-i image====<br />
[[Media:Input-121P.mrc | Input file]]<br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Input-mrcImageTrans.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Input1-mrcImageTrans.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">0 (0, 0, 0)<br> <br />
3500.79 (49, 53, 30)<br> <br />
11.0585<br> <br />
118.123<br> <br />
0.118123<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
=== Example of options only essential ===<br />
====30° rotation around the Z-axis====<br />
<div>-M 's data</div><br />
<pre><br />
0.866025 -0.500000 0.000000 <br />
0.500000 0.866025 0.000000 <br />
0.000000 0.000000 1.000000 <br />
0.000000 0.000000 0.000000 <br />
<br />
</pre><br />
<br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-mrcImageTrans.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata1-mrcImageTrans.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">0 (0, 0, 0)<br> <br />
3500.79 (35, 52, 30)<br> <br />
11.0851<br> <br />
118.917<br> <br />
0.118917<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br><br />
<br />
====30° rotation around the Z-axis + Parallel shift(x+20, y+20, z+20)====<br />
<div>-M 's data</div><br />
<pre><br />
0.866025 -0.500000 0.000000 <br />
0.500000 0.866025 0.000000 <br />
0.000000 0.000000 1.000000 <br />
20.000000 20.000000 20.000000 <br />
<br />
</pre><br />
<br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata2-mrcImageTrans.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata3-mrcImageTrans.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">0 (0, 0, 0)<br> <br />
3500.79 (55, 72, 50)<br> <br />
11.0851<br> <br />
118.917<br> <br />
0.118917<br></p> <br />
</td> <br />
</tr> <br />
</table></div>
Kinoshita