Kinoshita: Created page with "'''mrcImageTransformDescartesIntoPolar''' is Eos's Command that transforms from Cartesian coordinate system to Polar coordinates system. == List of option == === Mai..."

2014-08-04T03:00:30Z

Created page with "'''mrcImageTransformDescartesIntoPolar''' is Eos's Command that transforms from Cartesian coordinate system to Polar coordinates system. == List of option == === Mai..."

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'''mrcImageTransformDescartesIntoPolar''' is [[Eos]]'s [[Command]] that transforms from Cartesian coordinate system to Polar coordinates system.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-dr</td>
<td>Optional</td>
<td>Delta r of outputfile[A].</td>
<td>1</td>
</tr>
<tr>
<td>-dtheta</td>
<td>Optional</td>
<td>Delta theta of outputfile.[degree]</td>
<td>1</td>
</tr>
<tr>
<td>-dphi</td>
<td>Optional</td>
<td>Delta phi of outputfile.[degree]</td>
<td>1</td>
</tr>
<tr>
<td>-zaxis</td>
<td>Optional</td>
<td>vector of z-axis: (zx, zy, zz)</td>
<td>(0, 0, 1)</td>
</tr>
<tr>
<td>-xaxis</td>
<td>Optional</td>
<td>vector of x-axis: (xx, xy, xz)</td>
<td>(1, 0, 0)</td>
</tr>
<tr>
<td>-centre</td>
<td>Optional</td>
<td>centre of image: (cx, cy, cz)</td>
<td>(0, 0, 0)</td>
</tr>
<tr>
<td>-rweight</td>
<td>Optional</td>
<td>r-weighted</td>
<td></td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>Image centre is gravity of centre of image.</td>
</tr>
<tr>
<td>1</td>
<td>Image centre is defined by the options of -axis -centre.</td>
</tr>
</table>

== Execution example ==
===[[Media:1VOM.mrc | Input file]] image===
<table>
<tr>
<td>[[File:Input-1VOM.png]] 
xy-plane 
</td>
<td>[[File:Input1-1VOM.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
3398.12 (23, 55, 41) 
72.129 
294.805 
0.368507 
</td>
</tr>
</table>
 

=== Example of options only essential ===
<table>
<tr>
<td>[[File:Outdata-mrcImageTransformDescartesIntoPolar.png]] 
xy-plane 
</td>
<td>[[File:Outdata1-mrcImageTransformDescartesIntoPolar.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
106990 (217, 134, 38) 
945.995 
4903.65 
3.0458 
</td>
</tr>
</table>
 

=== Option -dr===
====Case: dr=0.5====
<table>
<tr>
<td>[[File:Outdata-dr-mrcImageTransformDescartesIntoPolar.png]] 
xy-plane 
</td>
<td>[[File:Outdata1-dr-mrcImageTransformDescartesIntoPolar.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
106990 (217, 134, 76) 
963.711 
4966.22 
2.18119 
</td>
</tr>
</table>
 

=== Option -dtheta===
====Case: dtheta=2====
<table>
<tr>
<td>[[File:Outdata-dtheta-mrcImageTransformDescartesIntoPolar.png]] 
xy-plane 
</td>
<td>[[File:Outdata1-dtheta-mrcImageTransformDescartesIntoPolar.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
100562 (10, 57, 38) 
947.037 
4908.58 
4.31175 
</td>
</tr>
</table>
 

=== Option -dphi===
====Case: dphi=3====
<table>
<tr>
<td>[[File:Outdata-dphi-mrcImageTransformDescartesIntoPolar.png]] 
xy-plane 
</td>
<td>[[File:Outdata1-dphi-mrcImageTransformDescartesIntoPolar.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
95524.3 (53, 84, 36) 
936.398 
4885.31 
5.27779 
</td>
</tr>
</table>
 

=== Option -m===
====Case: m=1====
=====Case: No other settings=====
<table>
<tr>
<td>[[File:Outdata-m1-mrcImageTransformDescartesIntoPolar.png]] 
xy-plane 
</td>
<td>[[File:Outdata1-m1-mrcImageTransformDescartesIntoPolar.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
2834.1 (341, 105, 17) 
32.6544 
163.49 
0.101548 
</td>
</tr>
</table>
 

=====Case: zaxis=(0, 0, -1)=====
<table>
<tr>
<td>[[File:Outdata-m1zaxis-mrcImageTransformDescartesIntoPolar.png]] 
xy-plane 
</td>
<td>[[File:Outdata1-m1zaxis-mrcImageTransformDescartesIntoPolar.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
2834.1 (19, 73, 17) 
32.6544 
163.49 
0.101548 
</td>
</tr>
</table>
 

=====Case: xaxis=(1.7, 0, -1)=====
<table>
<tr>
<td>[[File:Outdata-m1xaxis-mrcImageTransformDescartesIntoPolar.png]] 
xy-plane 
</td>
<td>[[File:Outdata1-m1xaxis-mrcImageTransformDescartesIntoPolar.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
2924.82 (32, 100, 23) 
23.4798 
139.162 
0.0864377 
</td>
</tr>
</table>
 

=== Option -rweight===
=====Case: -rweight, m=1, xaxis=(1.7, 0, -1)=====
<table>
<tr>
<td>[[File:Outdata-rweight-mrcImageTransformDescartesIntoPolar.png]] 
xy-plane 
</td>
<td>[[File:Outdata1-rweight-mrcImageTransformDescartesIntoPolar.png]] 
yz-plane 
</td>
<td>Min 
Max 
Mean 
SD 
SE 
</td>
<td>0 (0, 0, 0) 
100365 (34, 132, 39) 
693.379 
4235.18 
2.6306 
</td>
</tr>
</table>

mrcImageTransformDescartesIntoPolar - Revision history

Kinoshita: Created page with "'''mrcImageTransformDescartesIntoPolar''' is Eos's Command that transforms from Cartesian coordinate system to Polar coordinates system. == List of option == === Mai..."