Kinoshita: /* Main option */

2014-08-04T08:25:37Z

‎Main option

Kinoshita at 05:46, 4 August 2014

2014-08-04T05:46:11Z

Kinoshita: Created page with "'''mrcImageUnbentROI''' is２次元画像からのスプライン曲線に則った切り出しを行う Eos's Command.例えば、曲がったフィラメント画像..."

2014-08-04T05:31:44Z

Created page with "'''mrcImageUnbentROI''' is２次元画像からのスプライン曲線に則った切り出しを行う Eos's Command.例えば、曲がったフィラメント画像..."

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'''mrcImageUnbentROI''' is２次元画像からのスプライン曲線に則った切り出しを行う [[Eos]]'s [[Command]].例えば、曲がったフィラメント画像を真っ直ぐにして解析したい場合等に使用する。

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-r</td>
<td>Optional</td>
<td>roiLine: [[Variable]]: (x0, y0, x1, y1, ...)</td>
<td>NULL</td>
</tr>
<tr>
<td>-x</td>
<td>Essential</td>
<td>Width: Source</td>
<td>1.0</td>
</tr>
<tr>
<td>-y</td>
<td>Optional</td>
<td>Hight: Source</td>
<td>1.0</td>
</tr>
<tr>
<td>-W</td>
<td>Optional</td>
<td>Width: Dst</td>
<td>1.0</td>
</tr>
<tr>
<td>-H</td>
<td>Optional</td>
<td>Hight: Dst</td>
<td>1.0</td>
</tr>
<tr>
<td>-cor</td>
<td>Optional</td>
<td>Correlation Window along Y-axis: [A]</td>
<td>360.0</td>
</tr>
<tr>
<td>-S</td>
<td>Optional</td>
<td>When inputfile is shrinked</td>
<td>1</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<div>-r is required for determine spline. </div>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>

== Execution example ==
===[[Media:Input-1B7T-2D.mrc | Input file]] image===
<table>
<tr>
<td>[[File:Input-1B7T-2D.png]]</td>
<td>Size 
Mode 
Min 
Max 
Mean 
SD 
SE 
</td>
<td>( 50, 80, 1) 
mrcFloatImage 
0 (0, 0, 0) 
178250 (35, 57, 0) 
14921.9 
30087.2 
475.72 
</td>
</tr>
</table>
 

=== Option -x, -r===
====Case: x=50, r=(30, 15, 25, 40, 45, 75)====
<table>
<tr>
<td>[[File:Outdata-r-mrcImageUnbentROI.png]]</td>
<td>Size 
Mode 
Min 
Max 
Mean 
SD 
SE 
</td>
<td>( 50, 65, 1) 
mrcFloatImage 
0 (0, 0, 0) 
178250 (28, 46, 0) 
17170 
31431.7 
551.348 
</td>
</tr>
</table>
 

<div>In the following, Setting at x=50, r=(30, 15, 25, 40, 45, 75)</div>
=== Option -y===
====Case: y=50====
<table>
<tr>
<td>[[File:Outdata-y-mrcImageUnbentROI.png]]</td>
<td>Size 
Mode 
Min 
Max 
Mean 
SD 
SE 
</td>
<td>( 50, 50, 1) 
mrcFloatImage 
0 (0, 0, 0) 
178250 (28, 46, 0) 
20439.3 
33908.1 
678.161 
</td>
</tr>
</table>
 

=== Option -W===
====Case: W=65====
<table>
<tr>
<td>[[File:Outdata-W-mrcImageUnbentROI.png]]</td>
<td>Size 
Mode 
Min 
Max 
Mean 
SD 
SE 
</td>
<td> 
mrcFloatImage 
0 (0, 0, 0) 
178250 (37, 47, 0) 
17321.9 
31658.9 
487.06 
</td>
</tr>
</table>
 

=== Option -H===
====Case: H=65, y=50====
<table>
<tr>
<td>[[File:Outdata-H-mrcImageUnbentROI.png]]</td>
<td>Size 
Mode 
Min 
Max 
Mean 
SD 
SE 
</td>
<td>( 50, 65, 1) 
mrcFloatImage 
0 (0, 0, 0) 
178250 (28, 60, 0) 
20492.4 
34038.3 
597.072 
</td>
</tr>
</table>
 

=== Option -cor===
====Case: cor=20====
<table>
<tr>
<td>[[File:Outdata-cor-mrcImageUnbentROI.png]]</td>
<td>Size 
Mode 
Min 
Max 
Mean 
SD 
SE 
</td>
<td>( 50, 65, 1) 
mrcFloatImage 
0 (0, 0, 0) 
178250 (24, 48, 0) 
18472.8 
31551.4 
553.448 
</td>
</tr>
</table>

← Older revision		Revision as of 05:46, 4 August 2014
Line 1:		Line 1:
−	'''mrcImageUnbentROI''' ~~is２次元画像からのスプライン曲線に則った切り出しを行う~~ [[Eos]]'s [[Command]].~~例えば、曲がったフィラメント画像を真っ直ぐにして解析したい場合等に使用する。~~	+	'''mrcImageUnbentROI''' is [[Eos]]'s [[Command]] that cuts out the 2D image in depending spline. For example, you can analysis as that the bended filament image is straightly.

@@ Line 38: / Line 38: @@
 				<td>-y</td>
 				<td>Optional</td>
-				<td>Hight: Source</td>
+				<td>Height: Source</td>
 				<td>1.0</td>
 			</tr>
@@ Line 50: / Line 50: @@
 				<td>-H</td>
 				<td>Optional</td>
-				<td>Hight: Dst</td>
+				<td>Height: Dst</td>
 				<td>1.0</td>
 			</tr>

mrcImageUnbentROI - Revision history

Kinoshita: /* Main option */

Kinoshita at 05:46, 4 August 2014

Kinoshita: Created page with "'''mrcImageUnbentROI''' is２次元画像からのスプライン曲線に則った切り出しを行う Eos's Command.例えば、曲がったフィラメント画像..."