http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?action=history&feed=atom&title=mrcImageUntwist 2026-05-04T16:25:47Z Revision history for this page on the wiki MediaWiki 1.23.6 http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcImageUntwist&diff=2674&oldid=prev 2014-08-04T06:09:43Z

<p>Created page with &quot;&#039;&#039;&#039;mrcImageUntwist&#039;&#039;&#039; is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>&#039;s <a href="/Eos/index.php/Command" title="Command">Command</a> that performs untwist depending to helical symmetry. == List of option == === Main option === &lt;table border=&quot;1&quot;&gt; &lt;tr&gt;...&quot;</p> <p><b>New page</b></p><div>'''mrcImageUntwist''' is [[Eos]]'s [[Command]] that performs untwist depending to helical symmetry.<br /> <br /> <br /> == List of option ==<br /> === Main option ===<br /> &lt;table border=&quot;1&quot;&gt;<br /> &lt;tr&gt; <br /> &lt;th&gt;Option&lt;/th&gt; <br /> &lt;th&gt;Essential/Optional&lt;/th&gt; <br /> &lt;th&gt;Description&lt;/th&gt; <br /> &lt;th&gt;Default&lt;/th&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-i&lt;/td&gt; <br /> &lt;td&gt;Essential&lt;/td&gt; <br /> &lt;td&gt;Input: [[mrcImage]]&lt;/td&gt; <br /> &lt;td&gt;NULL&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-o&lt;/td&gt; <br /> &lt;td&gt;Essential&lt;/td&gt; <br /> &lt;td&gt;Output: [[mrcImage]]&lt;/td&gt; <br /> &lt;td&gt;NULL&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-dz&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;deltaz(A)&lt;/td&gt; <br /> &lt;td&gt;27.3&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-dphi&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;deltaphi(degree)&lt;/td&gt; <br /> &lt;td&gt;13.84&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-c&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;ConfigurationFile&lt;/td&gt; <br /> &lt;td&gt;NULL&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-m&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;Mode&lt;/td&gt; <br /> &lt;td&gt;0&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-h&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;Help&lt;/td&gt; <br /> &lt;td&gt;　&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt; <br /> <br /> === -m details ===<br /> &lt;table border=&quot;1&quot;&gt;<br /> &lt;tr&gt; <br /> &lt;th&gt;Value&lt;/th&gt; <br /> &lt;th&gt;Description&lt;/th&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;0&lt;/td&gt; <br /> &lt;td&gt;&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt; <br /> <br /> <br /> == Execution example ==<br /> ===[[Media:Input-ThickFilaments1.mrc | Input file]] image===<br /> &lt;table&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Input-mrcImageUntwist.png]]&lt;br&gt;<br /> xy-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Input1-mrcImageUntwist.png]]&lt;br&gt;<br /> yz-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;Min&lt;br&gt; <br /> Max&lt;br&gt; <br /> Mean&lt;br&gt; <br /> SD&lt;br&gt; <br /> SE&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;0 (0, 0, 0)&lt;br&gt; <br /> 4.07334 (34, 9, 75)&lt;br&gt; <br /> 0.00164516&lt;br&gt; <br /> 0.0572113&lt;br&gt; <br /> 8.29149e-05&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt; <br /> <br /> <br /> === Example of options only essential ===<br /> &lt;table&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata-mrcImageUntwist.png]]&lt;br&gt;<br /> xy-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata1-mrcImageUntwist.png]]&lt;br&gt;<br /> yz-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;Min&lt;br&gt; <br /> Max&lt;br&gt; <br /> Mean&lt;br&gt; <br /> SD&lt;br&gt; <br /> SE&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;-215.46 (45, 57, 17)&lt;br&gt; <br /> 1556.03 (37, 10, 30)&lt;br&gt; <br /> 0.910305&lt;br&gt; <br /> 19.6896&lt;br&gt; <br /> 0.0285357&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt; <br /> <br /> <br /> === Option -dz===<br /> ====Case: dz=20==== <br /> &lt;table&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata-dz-mrcImageUntwist.png]]&lt;br&gt;<br /> xy-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata1-dz-mrcImageUntwist.png]]&lt;br&gt;<br /> yz-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;Min&lt;br&gt; <br /> Max&lt;br&gt; <br /> Mean&lt;br&gt; <br /> SD&lt;br&gt; <br /> SE&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;-216.305 (50, 14, 67)&lt;br&gt; <br /> 1563.7 (52, 18, 30)&lt;br&gt; <br /> 0.89842&lt;br&gt; <br /> 19.4892&lt;br&gt; <br /> 0.0282453&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt;<br /> <br /> <br /> === Option -dp===<br /> ====Case: dp=10==== <br /> &lt;table&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata-dp10-mrcImageUntwist.png]]&lt;br&gt;<br /> xy-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;Center&quot;&gt;[[File:Outdata1-dp-mrcImageUntwist.png]]&lt;br&gt;<br /> yz-plane&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt;Min&lt;br&gt; <br /> Max&lt;br&gt; <br /> Mean&lt;br&gt; <br /> SD&lt;br&gt; <br /> SE&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;td&gt;&lt;p align=&quot;left&quot;&gt; -220.774 (46, 11, 67)&lt;br&gt; <br /> 1555.32 (50, 16, 30)&lt;br&gt; <br /> 0.895189&lt;br&gt; <br /> 19.4794&lt;br&gt; <br /> 0.0282311&lt;br&gt;&lt;/p&gt; <br /> &lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt;</div>

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