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mrcImageVolumeCalc - Revision history
2026-05-04T15:26:15Z
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Kinoshita: Created page with "'''mrcImageVolumeCalc''' is Eos's Command. === List of option === <table border="1"> <div align="left"> <tr> <th>Option</th> <th>Essential/Optional..."
2014-08-04T06:50:29Z
<p>Created page with "'''mrcImageVolumeCalc''' is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>'s <a href="/Eos/index.php/Command" title="Command">Command</a>. === List of option === <table border="1"> <div align="left"> <tr> <th>Option</th> <th>Essential/Optional..."</p>
<p><b>New page</b></p><div>'''mrcImageVolumeCalc''' is [[Eos]]'s [[Command]].<br />
<br />
=== List of option ===<br />
<table border="1"><br />
<div align="left"><br />
<tr><br />
<th>Option</th><br />
<th>Essential/Optional</th><br />
<th>Description</th><br />
<th>Default</th><br />
</tr><br />
<tr><br />
<td>-i</td><br />
<td>Essential</td><br />
<td>Input: [[mrcImage]]</td><br />
<td>NULL</td><br />
</tr><br />
<tr><br />
<td>-o</td><br />
<td>Optional</td><br />
<td>Output: [[ASCII]]</td><br />
<td>stdout</td><br />
</tr><br />
<tr><br />
<td>-n</td><br />
<td>Optional</td><br />
<td>NumberOfMolecule</td><br />
<td>1.0</td><br />
</tr><br />
<tr><br />
<td>-M</td><br />
<td>Optional</td><br />
<td>MolecularWeight</td><br />
<td>1.0</td><br />
</tr><br />
<tr><br />
<td>-d</td><br />
<td>Optional</td><br />
<td>Density</td><br />
<td>1.35</td><br />
</tr><br />
<tr><br />
<td>-D</td><br />
<td>Optional</td><br />
<td>Delta[A]</td><br />
<td>5.0</td><br />
</tr><br />
<tr> <br />
<td>-R</td> <br />
<td>Optional</td> <br />
<td>(MinVol, MaxVol, DelVol)</td> <br />
<td>(0.0, 200.0, 10.0)</td> <br />
</tr> <br />
<tr><br />
<td>-I</td><br />
<td>Optional</td><br />
<td>Inverse</td><br />
<td>0</td><br />
</tr><br />
<tr><br />
<td>-format</td><br />
<td>Optional</td><br />
<td>Information format</td><br />
<td>ContourLevel(%3g): %g %lu</td><br />
</tr><br />
<tr> <br />
<td>-c</td> <br />
<td>Optional</td> <br />
<td>ConfigurationFile</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-m</td> <br />
<td>Optional</td> <br />
<td>Mode</td> <br />
<td>0</td> <br />
</tr> <br />
<tr><br />
<td>-h</td><br />
<td>Optional</td><br />
<td>Help</td><br />
<td> </td><br />
</tr><br />
</div><br />
</table><br />
<br><br />
===-format details===<br />
<div>By using %g, etc.. , it can output the information up to 5.<br><br />
Output order</div><br />
<pre><br />
1st double # ContourLevel[%] <br />
2nd double # Contour[value]<br />
3rd int # VolumeNumber [fromBlack]<br />
4th int # VolumeNumber [fromWhite] ; Default : omiited <br />
5th double # Volume[A^3] ; Default : omitted <br />
</pre><br />
<br><br />
<br />
=== -m details ===<br />
<table border="1"><br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>0</td> <br />
<td></td> <br />
</tr> <br />
</table> <br />
<br><br />
== Execution example ==<br />
===------Input file's image------===<br />
<div>Input file must be 3D image.</div><br />
<table><br />
<tr><br />
<td>[[File:Inputdata-mrcImageVolumeCalc.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">0<br><br />
2<br><br />
0.00148981<br><br />
0.043511<br><br />
4.26578e-05<br></p><br />
</td><br />
</tr><br />
</table><br />
<br />
===------Output------===<br />
<div>In this time, setting the data as Molecular weight from Input file(H-ras).<br><br />
Setting n=1,M=21000,d=1.35,D=1.700<br><br />
Output data is as the following.<br><br />
[[File:Outdata-mrcImageVolumeCalc.png]]</div><br />
<br />
===------Option -I------===<br />
<div>Use -I in addition above.<br><br />
[[File:Outdata-I-mrcImageVolumeCalc.png]]</div></div>
Kinoshita