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mrcImageWindowing - Revision history
2026-05-09T08:33:32Z
Revision history for this page on the wiki
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http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcImageWindowing&diff=2721&oldid=prev
Kinoshita: /* ------Option -m------ */
2014-08-04T07:08:23Z
<p><span dir="auto"><span class="autocomment">------Option -m------</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 07:08, 4 August 2014</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===------Option -m------===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===------Option -m------===</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>====Case: m=1====</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>====Case: m=1====</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>=====Case: -W Wy=<del class="diffchange diffchange-inline">２</del>=====</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>=====Case: -W Wy=<ins class="diffchange diffchange-inline">2</ins>=====</div></td></tr>
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Kinoshita
http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcImageWindowing&diff=2718&oldid=prev
Kinoshita: Created page with "'''mrcImageWindowing''' is Eos's Command that performs windowing to input file. == List of option == === Main option === <table border="1"> <div align="left"> <..."
2014-08-04T07:06:55Z
<p>Created page with "'''mrcImageWindowing''' is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>'s <a href="/Eos/index.php/Command" title="Command">Command</a> that performs windowing to input file. == List of option == === Main option === <table border="1"> <div align="left"> <..."</p>
<p><b>New page</b></p><div>'''mrcImageWindowing''' is [[Eos]]'s [[Command]] that performs windowing to input file.<br />
<br />
== List of option ==<br />
=== Main option ===<br />
<table border="1"><br />
<div align="left"><br />
<tr><br />
<th>Option</th><br />
<th>Essential/Optional</th><br />
<th>Description</th><br />
<th>Default</th><br />
</tr><br />
<tr><br />
<td>-i</td><br />
<td>Essential</td><br />
<td>Input: [[mrcImage]]</td><br />
<td>NULL</td><br />
</tr><br />
<tr><br />
<td>-o</td><br />
<td>Essential</td><br />
<td>Output: [[mrcImage]]</td><br />
<td>NULL</td><br />
</tr><br />
<tr><br />
<td>-W</td><br />
<td>Optional</td><br />
<td>Windowsing Size<br><br />
The values must be 1 or less.</td><br />
<td>(Wx WxMax Wy WyMax)→(0.1 0 0.1 0)</td><br />
</tr><br />
<tr><br />
<td>-m</td><br />
<td>Optional</td><br />
<td>Mode</td><br />
<td>0</td><br />
</tr><br />
<tr><br />
<td>-h</td><br />
<td>Optional</td><br />
<td>Help</td><br />
<td> </td><br />
</tr><br />
</div><br />
</table><br />
<br />
=== -m details ===<br />
<table border="1"><br />
<div align="left"><br />
<tr><br />
<th>Value</th><br />
<th>Description</th><br />
</tr><br />
<tr><br />
<td>0</td><br />
<td>90windowing</td><br />
</tr><br />
<tr><br />
<td>1</td><br />
<td>Option -W: using Wy</td><br />
</tr><br />
<tr><br />
<td>2</td><br />
<td>Option -W: using Wx,WxMax,Wy,WyMax</td><br />
</tr><br />
<tr><br />
<td>+16</td><br />
<td>Contrast down around mean. </td><br />
</tr><br />
</div><br />
</table><br />
<br />
<br />
== Execution example ==<br />
===------Input file's image------===<br />
<table><br />
<tr><br />
<td>[[File:B120-mrcImageWindowing.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-64.5759<br><br />
93.0617<br><br />
5.50826<br><br />
20.7262<br><br />
0.259078<br></p><br />
</td><br />
</tr><br />
</table><br />
<br />
===------Example of options only essential------===<br />
<table><br />
<tr><br />
<td>[[File:B120-out-mrcImageWindowing.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-64.5759<br><br />
93.0617<br><br />
5.52557<br><br />
19.1797<br><br />
0.239746<br></p><br />
</td><br />
</tr><br />
</table><br />
<br />
===------Option -m------===<br />
====Case: m=1====<br />
=====Case: -W Wy=２=====<br />
<table><br />
<tr><br />
<td>[[File:B120-m1-2-mrcImageWindowing.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-54.44<br><br />
93.0617<br><br />
5.86721<br><br />
15.4987<br><br />
0.193734<br></p><br />
</td><br />
</tr><br />
</table><br />
<br><br />
====Case: m=2====<br />
=====Case: -W all 0.2=====<br />
<table><br />
<tr><br />
<td>[[File:B120-m2-0.2-mrcImageWindowing.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-44.768<br><br />
93.0617<br><br />
5.56309<br><br />
15.9952<br><br />
0.199941<br></p><br />
</td><br />
</tr><br />
</table><br />
<br><br />
====Case: m=16====<br />
<table><br />
<tr><br />
<td>[[File:B120-m16-mrcImageWindowing.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-64.5759<br><br />
93.0617<br><br />
6.57686<br><br />
18.9585<br><br />
0.236981<br></p><br />
</td><br />
</tr><br />
</table><br />
<br><br />
====Case: m=17====<br />
=====Case: -W Wy=2=====<br />
<table><br />
<tr><br />
<td>[[File:B120-m17-02-mrcImageWindowing.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-54.44<br><br />
93.0617<br><br />
5.86721<br><br />
15.4987<br><br />
0.193734<br></p><br />
</td><br />
</tr><br />
</table><br />
<div>There is no change between m=1 and m=17 in this time.</div><br />
<br><br />
====Case: M=18====<br />
=====Case: -W all 0.2 =====<br />
<table><br />
<tr><br />
<td>[[File:B120-m18-0.2-mrcImageWindowing.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-44.768<br><br />
93.0617<br><br />
9.17013<br><br />
14.9189<br><br />
0.186486<br></p><br />
</td><br />
</tr><br />
</table><br />
=====Case: -W 0 0.2 0 0.2=====<br />
<table><br />
<tr><br />
<td>[[File:B120-m18-0.2-2-mrcImageWindowing.png]]</td><br />
<td><p align="left">Min<br><br />
Max<br><br />
Mean<br><br />
SD<br><br />
SE<br></p><br />
</td><br />
<td><p align="left">-64.5759<br><br />
93.0617<br><br />
7.50673<br><br />
17.2497<br><br />
0.215621<br></p><br />
</td><br />
</tr><br />
</table></div>
Kinoshita