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mrcRadon2Dto3D - Revision history
2026-05-09T08:34:04Z
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http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcRadon2Dto3D&diff=2800&oldid=prev
Kinoshita: Created page with "'''mrcRadon2Dto3D''' is Eos's Command that transforms from 2D Radon Image set to 3D Radon Image. == List of option == === Main option === <table border="1"> <tr..."
2014-08-06T00:22:05Z
<p>Created page with "'''mrcRadon2Dto3D''' is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>'s <a href="/Eos/index.php/Command" title="Command">Command</a> that transforms from 2D Radon Image set to 3D Radon Image. == List of option == === Main option === <table border="1"> <tr..."</p>
<p><b>New page</b></p><div>'''mrcRadon2Dto3D''' is [[Eos]]'s [[Command]] that transforms from 2D Radon Image set to 3D Radon Image.<br />
<br />
<br />
== List of option ==<br />
=== Main option ===<br />
<table border="1"><br />
<tr> <br />
<th>Option</th> <br />
<th>Essential/Optional</th> <br />
<th>Description</th> <br />
<th>Default</th> <br />
</tr> <br />
<tr> <br />
<td>-I</td> <br />
<td>Essential</td> <br />
<td>Input: [[ASCII]](File List)</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-Ib</td> <br />
<td>Optional</td> <br />
<td>InputDataFileListBefore</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-ib</td> <br />
<td>Optional</td> <br />
<td>InputDataFileBeforeData: mrcImageRadon3D</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-iwb</td> <br />
<td>Optional</td> <br />
<td>InputWeightDataFileBeforeData: mrcImageRadon3D</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-o</td> <br />
<td>Essential</td> <br />
<td>Output: [[mrcImage]](radon3D)</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-ow</td> <br />
<td>Essential</td> <br />
<td>Output: [[mrcImage]](weight)</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-dp</td> <br />
<td>Essential</td> <br />
<td>Input: deltaP</td> <br />
<td>2.0</td> <br />
</tr> <br />
<tr> <br />
<td>-dtheta</td> <br />
<td>Essential</td> <br />
<td>Input: deltaTheta</td> <br />
<td>1</td> <br />
</tr> <br />
<tr> <br />
<td>-dphi</td> <br />
<td>Essential</td> <br />
<td>Input: deltaPhi</td> <br />
<td>1</td> <br />
</tr> <br />
<tr> <br />
<td>-T</td> <br />
<td>Optional</td> <br />
<td>Threshold</td> <br />
<td>1.0</td> <br />
</tr> <br />
<tr> <br />
<td>-InterpolationMode</td> <br />
<td>Optional</td> <br />
<td>[[Interpolation]] Mode</td> <br />
<td>0</td> <br />
</tr> <br />
<tr> <br />
<td>-m</td> <br />
<td>Optional</td> <br />
<td>Radon2Dto3D Intepolation Mode</td> <br />
<td>0</td> <br />
</tr> <br />
<tr> <br />
<td>-h</td> <br />
<td>Optional</td> <br />
<td>Help</td> <br />
<td> </td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
===-InterpolationMode details===<br />
Setting of [[Interpolation]] method<br />
<table border="1"> <br />
<div align="left"> <br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>0</td> <br />
<td>Nearest neighbor method</td> <br />
</tr> <br />
<tr> <br />
<td>1</td> <br />
<td>Bi-linear interpolation method</td> <br />
</tr> <br />
<tr> <br />
<td>2</td> <br />
<td>Cubic convolution method</td> <br />
</tr> <br />
<tr> <br />
<td>3</td> <br />
<td>Polynomial interpolation method</td> <br />
</tr> <br />
</div> <br />
</table><br />
<br><br />
<br />
===-m details===<br />
<table border="1"><br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>0</td> <br />
<td>NearestNeighbor</td> <br />
</tr> <br />
<tr> <br />
<td>1</td> <br />
<td>HigherOrder (-T)</td> <br />
</tr> <br />
</table> <br />
<br />
===-I format===<br />
<pre><br />
2DRadonfilename RotMode Rot1 Rot2 Rot3<br />
. . . . .<br />
. . . . .<br />
. . . . .<br />
<br />
</pre><br />
<br />
== Execution example ==<br />
===[[Media:Input-2DRadonSet0.zip | Input file]] data===<br />
<pre><br />
/Eos/2DRadonSet0/Set0.mrc ZOYS 0 0 0<br />
/Eos/2DRadonSet0/Set1.mrc ZOYS 0 45 0<br />
/Eos/2DRadonSet0/Set2.mrc ZOYS 0 90 0<br />
<br />
...<br />
<br />
/Eos/2DRadonSet0/Set8.mrc ZOYS 0 360 0<br />
/Eos/2DRadonSet0/Set9.mrc ZOYS 45 0 0<br />
/Eos/2DRadonSet0/Set10.mrc ZOYS 45 90 0<br />
<br />
...<br />
<br />
/Eos/2DRadonSet0/Set17.mrc ZOYS 45 360 0<br />
/Eos/2DRadonSet0/Set18.mrc ZOYS 90 0 0<br />
/Eos/2DRadonSet0/Set19.mrc ZOYS 90 90 0<br />
<br />
...<br />
<br />
/Eos/2DRadonSet0/Set78.mrc ZOYS 360 270 0<br />
/Eos/2DRadonSet0/Set79.mrc ZOYS 360 315 0<br />
/Eos/2DRadonSet0/Set80.mrc ZOYS 360 360 0<br />
</pre><br />
<br />
<br />
=== Example of options only essential ===<br />
====Case: dp=2, dtheta=1, dphi=1====<br />
<div>-o 's image</div><br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-mrcRadon2Dto3D.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata1-mrcRadon2Dto3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-2.57165 (24, 86, 135)<br> <br />
2746.57 (15, 90, 6)<br> <br />
82.8658<br> <br />
360.577<br> <br />
0.283296<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br />
<div>-ow 's image</div><br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata2-mrcRadon2Dto3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">0 (0, 2, 1)<br> <br />
180 (0, 0, 90)<br> <br />
2.79444<br> <br />
16.1952<br> <br />
0.0127241<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br />
====Case: dp=4, dtheta=2, dphi=2====<br />
<div>-o 's image</div><br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata3-mrcRadon2Dto3D.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata4-mrcRadon2Dto3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-0.158943 (0, 66, 169)<br> <br />
2536.8 (5, 59, 0)<br> <br />
217.308<br> <br />
556.358<br> <br />
1.26184<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br />
<div>-ow 's image</div><br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata5-mrcRadon2Dto3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">0 (0, 2, 1)<br> <br />
1260 (11, 0, 0)<br> <br />
19.1204<br> <br />
66.4953<br> <br />
0.150814<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br />
<br />
=== Option -m===<br />
====Case: m=1, dp=2, dtheta=1, dphi=1====<br />
=====Case: No other settings=====<br />
<div>-o's image</div><br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-m-mrcRadon2Dto3D.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata1-m-mrcRadon2Dto3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-2.57166 (24, 86, 136)<br> <br />
2746.57 (15, 91, 6)<br> <br />
172.326<br> <br />
504.539<br> <br />
0.396404<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br />
<div>-ow 's image</div><br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata2-m-mrcRadon2Dto3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">0 (0, 3, 1)<br> <br />
156 (0, 0, 0)<br> <br />
2.98641<br> <br />
10.0724<br> <br />
0.0079136<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br />
=====Case: T=0.3=====<br />
<div>-o's image</div><br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-T-mrcRadon2Dto3D.png]]<br><br />
xy-plane<br></p> <br />
</td> <br />
<td><p align="Center">[[File:Outdata1-T-mrcRadon2Dto3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">-2.57165 (24, 86, 135)<br> <br />
2746.57 (15, 91, 6)<br> <br />
68.1399<br> <br />
327.812<br> <br />
0.257553<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br />
<div>-ow 's image</div><br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata2-T-mrcRadon2Dto3D.png]]<br><br />
yz-plane<br></p> <br />
</td> <br />
<td><p align="left">Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">0 (0, 90, 0)<br> <br />
156 (0, 0, 0)<br> <br />
1.5178<br> <br />
9.05289<br> <br />
0.00711262<br></p> <br />
</td> <br />
</tr> <br />
</table></div>
Kinoshita