mrcRefCorrelation - Revision history

Kinoshita: Created page with "'''mrcRefCorrelation''' is Eos's Command that calculates correlation value about Reference projection image. == List of option == === Main option ===
2014-08-06T01:05:14Z
Created page with "'''mrcRefCorrelation''' is Eos's Command that calculates correlation value about Reference projection image. == List of option == === Main option === <table border..."
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'''mrcRefCorrelation''' is [[Eos]]'s [[Command]] that calculates correlation value about Reference projection image.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-r</td>
<td>Optional</td>
<td>Reference: [[mrcImage]] (For m=1 only)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-n</td>
<td>Optional</td>
<td>Number of points to pick up at random. (For M=1 only)</td>
<td>(Input file z) / 10</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode1</td>
<td>0</td>
</tr>
<tr>
<td>-M</td>
<td>Optional</td>
<td>Mode2</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

===-m details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>AutoCorrelation </td>
</tr>
<tr>
<td>1</td>
<td>CrossCorrelation</td>
</tr>
</table>

===-M details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>All is to be calculated</td>
</tr>
<tr>
<td>1</td>
<td>Pick up at random</td>
</tr>
<tr>
<td>2</td>
<td>Calculate only Omega=0,Alpha=0 </td>
</tr>
</table>

== Execution example ==
===[[Media:Input-121P1-R-N.mrc | Input file]] image===
<table>
<tr>
<td><p align="center">[[File:Input-121P1-R-N.png]]<br>
z=156 ~ 170<br></p>
</td>
<td><p align="left">Size<br>
Mode<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 56, 27, 326)<br>
mrcFloatImage <br>
-27740.5 (18, 4, 153)<br>
49036.6 (29, 9, 108)<br>
6090.33<br>
9165.21<br>
13.0544<br></p>
</td>
</tr>
</table>

=== Example of options only essential ===
<div>In z=0, the image information is stored.</div>
<table>
<tr>
<td><p align="center">[[File:Outdata-mrcRefCorrelation.png]]<br>
z=1<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0.235765 (44, 2, 0)<br>
1 (0, 0, 0)<br>
0.339868<br>
0.0484346<br>
0.00014903<br></p>
</td>
</tr>
</table>

<div>z=1 's image By [[mrcImageMakeDump]]</div>
<pre>
0 0 1
1 0 0.456042
2 0 0.397887
3 0 0.401696
4 0 0.36812
5 0 0.392998

...

40 2 0.324856
41 2 0.301582
42 2 0.289369
43 2 0.260067
44 2 0.235765
45 2 0.293627
46 2 0.292144
47 2 0.348354
48 2 0.302392
49 2 0.271946

...

320 324 0.370506
321 324 0.358116
322 324 0.353934
323 324 0.389242
324 324 1
</pre>

=== Option -M===
====Case: M=1====
=====Case: No other settings=====
<div>Output</div>
<pre>
289 31 6 204 320 42 309 261 161 131 115 178 181 109 238 113 250 277 244
13 134 267 63 165 218 220 69 93 35 23 125 120
</pre>

<div>z=1 's image By [[mrcImageMakeDump]]</div>
<pre>
0 0 0.272846
1 0 0.326312
2 0 0.392998
3 0 0.341142
4 0 0.341313

...

28 0 0.295094
29 0 0.303043
30 0 0.36462
31 0 0.339987
0 1 0.305788
1 1 0.324972
2 1 0.372525
3 1 0.370551

...

27 324 0.31806
28 324 0.354882
29 324 0.339153
30 324 0.376581
31 324 0.341636
0 325 288
1 325 30
2 325 5
3 325 203
4 325 319

...

27 325 92
28 325 34
29 325 22
30 325 124
31 325 119
</pre>

<div>* Picked up image's No. is stored at tail of data.</div>

====Case: n=5====
<div>Output</div>
<pre>
93 36 239 219 101
</pre>

<div>z=1 's image By [[mrcImageMakeDump]]</div>
<pre>
0 0 0.253142
1 0 0.341922
2 0 0.33609
3 0 0.310942
4 0 0.315092
0 1 0.293338
1 1 0.339174
2 1 0.343336

...

0 324 0.31806
1 324 0.303364
2 324 0.365172
3 324 0.347945
4 324 0.365746
0 325 92
1 325 35
2 325 238
3 325 218
4 325 100
</pre>

====Case: M=2====
<div>Output</div>
<pre>
133 138 143 148 153 158 163 168 173 178 183 188 193
</pre>

<div>z=1 's image By [[mrcImageMakeDump]]</div>
<pre>
0 0 0.406135
1 0 0.375089
2 0 0.347396
3 0 0.351023
4 0 0.327572
5 0 0.320876
6 0 0.298545
7 0 0.322957
8 0 0.307044
9 0 0.293275
10 0 0.359563
11 0 0.321653
12 0 0.406869
0 1 0.428397
1 1 0.389286
2 1 0.338141

...

10 324 0.33418
11 324 0.365259
12 324 0.376797
0 325 132
1 325 137
2 325 142
3 325 147
4 325 152
5 325 157
6 325 162
7 325 167
8 325 172
9 325 177
10 325 182
11 325 187
12 325 192
</pre>

=== Option -m===
====Case: m=1====
<div>[[Media:Input-121P1-R.mrc | Reference file]]'s image</div>
<table>
<tr>
<td><p align="center">[[File:Input-121P1-R.png]]<br>
z=156 ~ 170<br></p>
</td>
<td><p align="left">Size<br>
Mode<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 56, 27, 326)<br>
mrcFloatImage <br>
-1503.16 (14, 25, 131)<br>
36873.4 (28, 20, 158)<br>
6082.23<br>
6479.76<br>
9.22942<br></p>
</td>
</tr>
</table>

<div>Output file's image</div>
<table>
<tr>
<td><p align="center">[[File:Outdata-m1-mrcRefCorrelation.png]]<br>
z=1<br></p>
</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0.366595 (44, 5, 0)<br>
0.746259 (65, 65, 0)<br>
0.478463<br>
0.0394641<br>
0.000121428<br></p>
</td>
</tr>
</table>

<div>z=1 's image By [[mrcImageMakeDump]]</div>
<pre>
0 0 0.706615
1 0 0.625646
2 0 0.535103
3 0 0.539974
4 0 0.542445

...

40 5 0.478981
41 5 0.441631
42 5 0.433964
43 5 0.396314
44 5 0.366595
45 5 0.432156
46 5 0.431352
47 5 0.417774
48 5 0.416638
49 5 0.404879

...

60 65 0.656008
61 65 0.594059
62 65 0.550396
63 65 0.557099
64 65 0.533312
65 65 0.746259
66 65 0.625441
67 65 0.533038
68 65 0.522493
69 65 0.531606

...

320 324 0.492588
321 324 0.526999
322 324 0.537706
323 324 0.568111
324 324 0.708036
</pre>