Kinoshita: Created page with "'''mrcRefHeaderCreate''' is Eos's Command that adds Ref Header to Reference Projection Image. This Ref Header means stored information at z=0, and it is entirely diffe..."

2014-08-06T02:00:35Z

Created page with "'''mrcRefHeaderCreate''' is Eos's Command that adds Ref Header to Reference Projection Image. This Ref Header means stored information at z=0, and it is entirely diffe..."

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'''mrcRefHeaderCreate''' is [[Eos]]'s [[Command]] that adds Ref Header to Reference Projection Image. This Ref Header means stored information at z=0, and it is entirely different to Header of [[mrcImage]] file.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-p</td>
<td>Optional</td>
<td>Position of Center of model creation:(Phi[degree], Omega[degree], Alpha[degree])</td>
<td>(0, 0, 0)</td>
</tr>
<tr>
<td>-w</td>
<td>Optional</td>
<td>Width:(Phi[±degree], Omega[±degree], Alpha[±degree])</td>
<td>(360, 10, 10)</td>
</tr>
<tr>
<td>-d</td>
<td>Optional</td>
<td>Interval of model creation[degree] :(Phi[around z axis], Omega[y axis], Alpha[x axis])</td>
<td>(5, 5, 5)</td>
</tr>
<tr>
<td>-sy</td>
<td>Optional</td>
<td>Start y (For m=1 only)</td>
<td>0</td>
</tr>
<tr>
<td>-ey</td>
<td>Optional</td>
<td>End y (For m=1 only, default: Ny-1)</td>
<td>0</td>
</tr>
<tr>
<td>-refsize</td>
<td>Optional</td>
<td>Size of reference data.</td>
<td>0</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<div>-p: Omega and Alpha range must be around 0 or 180. </div>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
<tr>
<td>1</td>
<td></td>
</tr>
</table>

== Execution example ==
===[[Media:Input-121P1-R.mrc | Input file]] image===
<table>
<tr>
<td><p align="center">[[File:Input-121P1-R.png]]<br>
z=156 ~ 170<br></p>
</td>
<td><p align="left">Size<br>
Mode<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 56, 27, 326)<br>
mrcFloatImage <br>
-1503.16 (14, 25, 131)<br>
36873.4 (28, 20, 158)<br>
6082.23<br>
6479.76<br>
9.22942<br></p>
</td>
</tr>
</table>

=== Example of options only essential ===
<div>z=0 's data By [[mrcImageMakeDump]]</div>
<pre>
0 0 0
1 0 0
2 0 0
3 0 5
4 0 5
5 0 5
6 0 360
7 0 10
8 0 10
9 0 0
10 0 0
11 0 0
12 0 0
13 0 0
14 0 0
15 0 0

...
</pre>

<div>z=156 ~ 170's image</div>
<table>
<tr>
<td>[[File:Outdata-mrcRefHeaderCreate.png]]</td>
<td><p align="left">Size<br>
Mode<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 56, 27, 327)<br>
mrcFloatImage <br>
-1503.16 (14, 25, 132)<br>
36873.4 (28, 20, 159)<br>
6063.63<br>
6478.56<br>
9.21358<br></p>
</td>
</tr>
</table>
<div>Ref Header is added at z=0, and each image shifts to next one.</div>

=== Option -p===
====Case: p=(11, 12, 13)====
<div>z=0 's data By [[mrcImageMakeDump]]</div>
<pre>
0 0 11
1 0 12
2 0 13
3 0 5
4 0 5
5 0 5
6 0 360
7 0 10
8 0 10
9 0 0
10 0 0
11 0 0
12 0 0
13 0 0
14 0 0
15 0 0

...
</pre>

=== Option -w===
====Case: w=(20, 30, 40)====
<div>z=0 's data By [[mrcImageMakeDump]]</div>
<pre>
0 0 0
1 0 0
2 0 0
3 0 5
4 0 5
5 0 5
6 0 20
7 0 30
8 0 40
9 0 0
10 0 0
11 0 0
12 0 0
13 0 0
14 0 0
15 0 0

...
</pre>

=== Option -d===
====Case: d=(2, 6, 8)====
<div>z=0 's data By [[mrcImageMakeDump]]</div>
<pre>
0 0 0
1 0 0
2 0 0
3 0 2
4 0 6
5 0 8
6 0 360
7 0 10
8 0 10
9 0 0
10 0 0
11 0 0
12 0 0
13 0 0
14 0 0
15 0 0

...
</pre>

=== Option -m===
====Case: m=1====
=====Case: No other settings=====
<div>z=0 's data By [[mrcImageMakeDump]]</div>
<pre>
0 0 0
1 0 0
2 0 0
3 0 5
4 0 5
5 0 5
6 0 360
7 0 10
8 0 10
9 0 0
10 0 26
11 0 0
12 0 2.44886e+08
13 0 0
14 0 0
15 0 0

...
</pre>

=====Case: sy=7 ,ey=33, refsize=44=====
<div>z=0 's data By [[mrcImageMakeDump]]</div>
<pre>
0 0 0
1 0 0
2 0 0
3 0 5
4 0 5
5 0 5
6 0 360
7 0 10
8 0 10
9 0 7
10 0 33
11 0 44
12 0 3.72162e+06
13 0 0
14 0 0
15 0 0

...
</pre>

mrcRefHeaderCreate - Revision history

Kinoshita: Created page with "'''mrcRefHeaderCreate''' is Eos's Command that adds Ref Header to Reference Projection Image. This Ref Header means stored information at z=0, and it is entirely diffe..."