Kinoshita: Created page with "'''mrcRefImageCorrelation''' is Eos's Command that outputs max and min of correlation value between Input mrcImage(single or multiple) and Reference(2DSet). == L..."

2014-08-06T02:24:50Z

Created page with "'''mrcRefImageCorrelation''' is Eos's Command that outputs max and min of correlation value between Input mrcImage(single or multiple) and Reference(2DSet). == L..."

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'''mrcRefImageCorrelation''' is [[Eos]]'s [[Command]] that outputs max and min of correlation value between Input [[mrcImage]](single or multiple) and Reference(2DSet).

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Optional</td>
<td>Input: [[mrcImage]](2D)</td>
<td>NULL</td>
</tr>
<tr>
<td>-r</td>
<td>Essential</td>
<td>Reference: [[mrcImage]](2DSet)</td>
<td>NULL</td>
</tr>
<tr>
<td>-I</td>
<td>Optional</td>
<td>Input: [[ASCII]] (File List)</td>
<td>stdin</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>To find the images in the reference file of min and max correlation.<br>
Correlation is calclated in the real space.</td>
</tr>
<tr>
<td>1</td>
<td> To calculate the correlation between one image of the reference file and input file.<br>
The calculation is performed in the fourier space and the output is [[mrcImage]]<br>
option z is needed.</td>
</tr>
</table>

===-I format===
<pre>
mrcFile1
mrcFile2
.
.
.

</pre>

== Execution example ==
===[[Media:Input-121P1-R.mrc | Reference file]] image===
<table>
<tr>
<td><p align="center">[[File:Input-121P1-R163.png]]<br>
z=163<br></p>
</td>
<td><p align="left">Size<br>
Mode<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 56, 27, 326)<br>
mrcFloatImage <br>
-1503.16 (14, 25, 131)<br>
36873.4 (28, 20, 158)<br>
6082.23<br>
6479.76<br>
9.22942<br></p>
</td>
</tr>
</table>

=== Option -i===
====[[Media:Input-121P1-R163-N.mrc | Input file]] is specified====
<div>-i 's image</div>
<table>
<tr>
<td>[[File:Input-121P1-R163-N.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-11845.8 (6, 13, 0)<br>
35379.1 (26, 16, 0)<br>
5971.45<br>
7299.77<br>
187.73<br></p>
</td>
</tr>
</table>

<div>Output </div>
<pre>
0 0.74104
1 0.758584
2 0.773967
3 0.78247
4 0.779196

...

160 0.819107
161 0.867341
162 0.937789
163 0.866901
164 0.803931

...

320 0.74582
321 0.756335
322 0.768114
323 0.782429
324 0.785562
min 205 0.729216
max 162 0.937789
</pre>

=== Option -I===
====Input file is specified====
<div>-I 's data</div>
<pre>
/Eos/img/Input-121P1-R162.mrc
/Eos/img/Input-121P1-R163-N.mrc
/Eos/img/Input-121P1-R164-N.mrc

</pre>

<div>[[Media:Input-121P1-R162.mrc | Input-121P1-R162.mrc]]'s image</div>
<table>
<tr>
<td>[[File:Input-121P1-R162.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-1191.36 (16, 25, 0)<br>
28576.9 (15, 16, 0)<br>
6076.13<br>
6529.7<br>
167.926<br></p>
</td>
</tr>
</table>

<div>-i 's Input file is used as Input-121P1-R163-N.mrc</div>

<div>[[Media:Input-121P1-R164-N.mrc | Input-121P1-R164-N.mrc]]'s image</div>
<table>
<tr>
<td>[[File:Input-121P1-R164-N.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">-20586.3 (8, 8, 0)<br>
38227.9 (16, 18, 0)<br>
6292.81<br>
9386.21<br>
241.387<br></p>
</td>
</tr>
</table>

<div>Output </div>
<pre>
/Eos/img/Input-121P1-R162.mrc min 270 0.787533 max 161 1
/Eos/img/Input-121P1-R163-N.mrc min 205 0.729216 max 162 0.937789
/Eos/img/Input-121P1-R164-N.mrc min 5 0.62733 max 163 0.816337
</pre>

mrcRefImageCorrelation - Revision history

Kinoshita: Created page with "'''mrcRefImageCorrelation''' is Eos's Command that outputs max and min of correlation value between Input mrcImage(single or multiple) and Reference(2DSet). == L..."