mrcRefImagepwzCorEstimate - Revision history

Kinoshita: Created page with "'''mrcRefImagepwzCorEstimate''' is Eos's Command that performs autocorrelation of reference filament data. == List of option == === Main option ===
2014-08-06T02:32:26Z
Created page with "'''mrcRefImagepwzCorEstimate''' is Eos's Command that performs autocorrelation of reference filament data. == List of option == === Main option === <table border="..."
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'''mrcRefImagepwzCorEstimate''' is [[Eos]]'s [[Command]] that performs autocorrelation of reference filament data.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Optional</td>
<td>Output: [[mrcImage]] (For m=1)</td>
<td>NULL</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>Output: stdout</td>
</tr>
<tr>
<td>1</td>
<td>Output: [[mrcImage]]</td>
</tr>
</table>

== Execution example ==
===[[Media:Input-ThickFilaments1-R.mrc | Input file]] image===
<table>
<tr>
<td><p align="center">[[File:Input-ThickFilaments1-R.png]]<br>
z=46 ~ 60<br></p>
</td>
<td><p align="left">Size<br>
Mode<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 90, 70, 106)<br>
mrcFloatImage <br>
-1.28686 (30, 27, 1)<br>
15 (8, 0, 0)<br>
0.118695<br>
0.579571<br>
0.000709225<br></p>
</td>
</tr>
</table>

=== Example of options only essential ===
<pre>
0 2.97366 28
1 3.14132 27
2 3.42458 27
3 3.68375 27
4 3.68744 27
5 4.21416 70
6 2.69841 68
7 3.66104 67
8 3.35867 61
9 3.03628 62
10 6.99341 62

...

58 7.04838 49
59 3.70859 47
60 1.74147 50
61 2.66442 51
62 2.88621 52
63 3.63981 52
64 2.5655 53
65 2.16142 53
66 0.0537301 54
67 0.000479917 54
68 0 0
69 0 0
</pre>

=== Option -m===
====Case: m=1====
<table>
<tr>
<td>[[File:Outdata-m1-mrcRefImagepwzCorEstimate.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (68, 0, 0)<br>
7.04838 (58, 0, 0)<br>
3.41883<br>
1.22516<br>
0.103545<br></p>
</td>
</tr>
</table>

<div>By [[mrcImageMakeDump]]</div>
<pre>
0 0 2.97366
1 0 3.14132
2 0 3.42458
3 0 3.68375
4 0 3.68744
5 0 4.21416
6 0 2.69841
7 0 3.66104
8 0 3.35867
9 0 3.03628
10 0 6.99341

...

58 0 7.04838
59 0 3.70859
60 0 1.74147
61 0 2.66442
62 0 2.88621
63 0 3.63981
64 0 2.5655
65 0 2.16142
66 0 0.0537301
67 0 0.000479917
68 0 0
69 0 0
0 1 2.97366
1 1 3.14132

...

58 1 7.04838
59 1 3.70859
60 1 1.74147
61 1 2.66442
62 1 2.88621
63 1 3.63981
64 1 2.5655
65 1 2.16142
66 1 0.0537301
67 1 0.000479917
68 1 0
69 1 0
</pre>