http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?action=history&feed=atom&title=mrcRefImagepwzCorModify
mrcRefImagepwzCorModify - Revision history
2026-06-04T15:53:42Z
Revision history for this page on the wiki
MediaWiki 1.23.6
http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcRefImagepwzCorModify&diff=2880&oldid=prev
Kinoshita: /* Main option */
2014-08-06T02:41:37Z
<p><span dir="auto"><span class="autocomment">Main option</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 02:41, 6 August 2014</td>
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<td colspan="2" class="diff-lineno">Line 38:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>-s</td>  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>-s</td>  </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>Optional</td>  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>Optional</td>  </div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> <td><del class="diffchange diffchange-inline">yシフト</del>[pixel]</td>  </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> <td><ins class="diffchange diffchange-inline">y-shift</ins>[pixel]</td>  </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>0.0</td>  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td>0.0</td>  </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> </tr>  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> </tr>  </div></td></tr>
<tr><td colspan="2" class="diff-lineno">Line 65:</td>
<td colspan="2" class="diff-lineno">Line 65:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td> </td>  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> <td> </td>  </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> </tr>  </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div> </tr>  </div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </table>  </div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </table></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===-m  details===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===-m  details===</div></td></tr>
</table>
Kinoshita
http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcRefImagepwzCorModify&diff=2879&oldid=prev
Kinoshita: Created page with "'''mrcRefImagepwzCorModify''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essential/Optiona..."
2014-08-06T02:41:12Z
<p>Created page with "'''mrcRefImagepwzCorModify''' is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>'s <a href="/Eos/index.php/Command" title="Command">Command</a>. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essential/Optiona..."</p>
<p><b>New page</b></p><div>'''mrcRefImagepwzCorModify''' is [[Eos]]'s [[Command]].<br />
<br />
<br />
== List of option ==<br />
=== Main option ===<br />
<table border="1"><br />
<tr> <br />
<th>Option</th> <br />
<th>Essential/Optional</th> <br />
<th>Description</th> <br />
<th>Default</th> <br />
</tr> <br />
<tr> <br />
<td>-i</td> <br />
<td>Essential</td> <br />
<td>Input: [[mrcImage]]</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-o</td> <br />
<td>Essential</td> <br />
<td>Output: [[mrcImage]]</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-nr</td> <br />
<td>Optional</td> <br />
<td>Needed only for old format</td> <br />
<td>0</td> <br />
</tr> <br />
<tr> <br />
<td>-mag</td> <br />
<td>Optional</td> <br />
<td>Ratio of new magnification to old magnification</td> <br />
<td>1</td> <br />
</tr> <br />
<tr> <br />
<td>-s</td> <br />
<td>Optional</td> <br />
<td>yシフト[pixel]</td> <br />
<td>0.0</td> <br />
</tr> <br />
<tr> <br />
<td>-c</td> <br />
<td>Optional</td> <br />
<td>ConfigurationFile</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-m</td> <br />
<td>Optional</td> <br />
<td>Mode1</td> <br />
<td>0</td> <br />
</tr> <br />
<tr> <br />
<td>-M</td> <br />
<td>Optional</td> <br />
<td>Mode2</td> <br />
<td>0</td> <br />
</tr> <br />
<tr> <br />
<td>-h</td> <br />
<td>Optional</td> <br />
<td>Help</td> <br />
<td> </td> <br />
</tr> <br />
</table> <br />
<br />
===-m details===<br />
<table border="1"><br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>+1</td> <br />
<td>min padding</td> <br />
</tr> <br />
<tr> <br />
<td>+2</td> <br />
<td>mirroring</td> <br />
</tr> <br />
<tr> <br />
<td>+4</td> <br />
<td>magnification change</td> <br />
</tr> <br />
<tr> <br />
<td>+8</td> <br />
<td>shift</td> <br />
</tr> <br />
</table> <br />
<br />
===-M details===<br />
<table border="1"><br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>1</td> <br />
<td>old format</td> <br />
</tr> <br />
<tr> <br />
<td>2</td> <br />
<td>mode1+No shift</td> <br />
</tr> <br />
</table> <br />
<br />
<br />
== Execution example ==<br />
===[[Media:Input-ThickFilaments1-R.mrc | Input file]] image===<br />
<table> <br />
<tr> <br />
<td><p align="center">[[File:Input-ThickFilaments1-R.png]]<br> <br />
z=46 ~ 60<br></p> <br />
</td> <br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">( 90, 70, 106)<br> <br />
mrcFloatImage <br> <br />
-1.28686 (30, 27, 1)<br> <br />
15 (8, 0, 0)<br> <br />
0.118695<br> <br />
0.579571<br> <br />
0.000709225<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br />
<br />
=== Example of options only essential ===<br />
<table> <br />
<tr> <br />
<td><p align="center">[[File:Outdata-mrcRefImagepwzCorModify.png]]<br> <br />
z=46 ~ 60<br></p> <br />
</td> <br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">( 90, 70, 106)<br> <br />
mrcFloatImage <br> <br />
-1.28686 (30, 27, 1)<br> <br />
15 (8, 0, 0)<br> <br />
0.118695<br> <br />
0.579571<br> <br />
0.000709225<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br />
<div>The image does not change by default setting.</div><br />
<br />
<br />
=== Option -m===<br />
====m=1====<br />
=====Case: No other settings===== <br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-m1-mrcRefImagepwzCorModify.png]]<br><br />
z=1<br></p> <br />
</td> <br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">( 90, 70, 106)<br> <br />
mrcFloatImage <br> <br />
-1.28686 (30, 27, 1)<br> <br />
15 (8, 0, 0)<br> <br />
0.00119622<br> <br />
0.0634054<br> <br />
7.75895e-05<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br />
<div>Image data is z=1 only.</div><br />
<br />
<br />
=====nr=10=====<br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-m1nr-mrcRefImagepwzCorModify.png]]<br><br />
z=1<br></p> <br />
</td> <br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">( 90, 70, 106)<br> <br />
mrcFloatImage <br> <br />
-1.28686 (30, 27, 1)<br> <br />
15 (8, 0, 0)<br> <br />
-0.000470822<br> <br />
0.07397<br> <br />
8.46714e-05<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br />
<div>Image data is z=1 only.</div><br />
<br />
<br />
====m=2====<br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-m2-mrcRefImagepwzCorModify.png]]<br><br />
z=1<br></p> <br />
</td> <br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">( 90, 70, 106)<br> <br />
mrcFloatImage <br> <br />
-1.28686 (30, 42, 1)<br> <br />
69 (9, 0, 0)<br> <br />
0.00140287<br> <br />
0.135198<br> <br />
0.000165442<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br />
<div>Image data is z=1 only.</div><br />
<br />
<br />
====m=4====<br />
=====mag=1.5===== <br />
<table> <br />
<tr> <br />
<td><p align="center">[[File:Outdata-m3mag-mrcRefImagepwzCorModify.png]]<br> <br />
z=46 ~ 60<br></p> <br />
</td> <br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">( 90, 70, 106)<br> <br />
mrcFloatImage <br> <br />
-1.39691 (19, 5, 34)<br> <br />
15 (8, 0, 0)<br> <br />
0.11907<br> <br />
0.587277<br> <br />
0.000586778<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br />
<br />
====m=8====<br />
=====Case: No other settings===== <br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-m8-mrcRefImagepwzCorModify.png]]<br><br />
z=1<br></p> <br />
</td> <br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">( 90, 70, 106)<br> <br />
mrcFloatImage <br> <br />
-1.28686 (30, 27, 1)<br> <br />
15 (8, 0, 0)<br> <br />
0.00119622<br> <br />
0.0634054<br> <br />
7.75895e-05<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br />
<div>Image data is z=1 only.</div><br />
<br />
<br />
=====s=10===== <br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-m8s-mrcRefImagepwzCorModify.png]]<br><br />
z=1<br></p> <br />
</td> <br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">( 90, 70, 106)<br> <br />
mrcFloatImage <br> <br />
-1.28686 (30, 37, 1)<br> <br />
15 (8, 0, 0)<br> <br />
0.00122617<br> <br />
0.0657241<br> <br />
8.04269e-05<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br />
<div>Image data is z=1 only.</div><br />
<br />
<br />
=== Option -M===<br />
====M=1====<br />
=====m=1, nr=10=====<br />
<table> <br />
<tr> <br />
<td><p align="Center">[[File:Outdata-M1-mrcRefImagepwzCorModify.png]]<br><br />
z=1<br></p> <br />
</td> <br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">( 90, 70, 106)<br> <br />
mrcFloatImage <br> <br />
-1.28686 (0, 0, 1)<br> <br />
74 (10, 0, 0)<br> <br />
-0.000354208<br> <br />
0.113137<br> <br />
0.000129505<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br />
<div>Image data is z=1 only.</div></div>
Kinoshita