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mrcRefPhaseImageCreate - Revision history
2026-05-14T06:15:36Z
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Kinoshita: Created page with "'''mrcRefPhaseImageCreate''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essential/Optional..."
2014-08-07T00:03:10Z
<p>Created page with "'''mrcRefPhaseImageCreate''' is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>'s <a href="/Eos/index.php/Command" title="Command">Command</a>. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essential/Optional..."</p>
<p><b>New page</b></p><div>'''mrcRefPhaseImageCreate''' is [[Eos]]'s [[Command]].<br />
<br />
<br />
== List of option ==<br />
=== Main option ===<br />
<table border="1"><br />
<tr> <br />
<th>Option</th> <br />
<th>Essential/Optional</th> <br />
<th>Description</th> <br />
<th>Default</th> <br />
</tr> <br />
<tr> <br />
<td>-i</td> <br />
<td>Essential</td> <br />
<td>Input: [[mrcImage]]</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-o</td> <br />
<td>Essential</td> <br />
<td>Output: [[mrcImage]]</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-p</td> <br />
<td>Optional</td> <br />
<td>Use (|F|^p ) to create fourier phase image</td> <br />
<td>1</td> <br />
</tr> <br />
<tr> <br />
<td>-C</td> <br />
<td>Optional</td> <br />
<td>Cutoff</td> <br />
<td>-1.0</td> <br />
</tr> <br />
<tr> <br />
<td>-c</td> <br />
<td>Optional</td> <br />
<td>ConfigurationFile</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-m</td> <br />
<td>Optional</td> <br />
<td>Mode</td> <br />
<td>0</td> <br />
</tr> <br />
<tr> <br />
<td>-h</td> <br />
<td>Optional</td> <br />
<td>Help</td> <br />
<td> </td> <br />
</tr> <br />
</table> <br />
<br />
=== -m details ===<br />
<table border="1"><br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>0</td> <br />
<td>If |F|<Cutoff ,this pixel is not used.Default:Mean/10</td> <br />
</tr> <br />
<tr> <br />
<td>1</td> <br />
<td>|F|<Cutoff*Mean is used to cut.Default:0.1</td> <br />
</tr> <br />
</table> <br />
<br />
<br />
== Execution example ==<br />
===[[Media:Input-121P1-R-P.mrc | Input file]] image===<br />
<table> <br />
<tr> <br />
<td><p align="center">[[File:Input-121P1-R-P163.png]]<br> <br />
z=163<br></p> <br />
</td> <br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">( 56, 28, 326)<br> <br />
mrcFloatImage <br> <br />
-1503.16 (14, 26, 131)<br> <br />
36873.4 (28, 21, 158)<br> <br />
6192.24<br> <br />
6388.63<br> <br />
8.93564<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br />
<br />
=== Example of options only essential ===<br />
<table> <br />
<tr> <br />
<td><p align="center">[[File:Outdata-mrcRefPhaseImageCreate.png]]<br> <br />
z=163<br></p> <br />
</td> <br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">( 56, 28, 326)<br> <br />
mrcFloatImage <br> <br />
-1723.74 (14, 26, 131)<br> <br />
36679.2 (27, 21, 188)<br> <br />
6192.24<br> <br />
6386.46<br> <br />
8.93261<br></p> <br />
</td> <br />
</tr> <br />
</table> <br />
<br />
=== Option -p===<br />
====Case: p=1.4==== <br />
<table> <br />
<tr> <br />
<td><p align="center">[[File:Outdata-p-mrcRefPhaseImageCreate.png]]<br> <br />
z=163<br></p> <br />
</td> <br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">( 56, 28, 326)<br> <br />
mrcFloatImage <br> <br />
0 (0, 1, 0)<br> <br />
2.56888e+06 (24, 20, 79)<br> <br />
887408<br> <br />
555222<br> <br />
776.577<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br />
=== Option -C===<br />
====Case: C=7000==== <br />
<table> <br />
<tr> <br />
<td><p align="center">[[File:Outdata-C-mrcRefPhaseImageCreate.png]]<br> <br />
z=163<br></p> <br />
</td> <br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">( 56, 28, 326)<br> <br />
mrcFloatImage <br> <br />
-5412.87 (7, 7, 21)<br> <br />
29733.4 (32, 19, 239)<br> <br />
6192.24<br> <br />
5838.31<br> <br />
8.16593<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br />
<br />
=== Option -m===<br />
====Case: m=1==== <br />
<table> <br />
<tr> <br />
<td><p align="center">[[File:Outdata-m1-mrcRefPhaseImageCreate.png]]<br> <br />
z=163<br></p> <br />
</td> <br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">( 56, 28, 326)<br> <br />
mrcFloatImage <br> <br />
-1503.16 (41, 26, 165)<br> <br />
36873.4 (27, 21, 188)<br> <br />
6192.24<br> <br />
6388.63<br> <br />
8.93564<br></p> <br />
</td> <br />
</tr> <br />
</table><br />
<br />
<br />
====Case: C=1, m=1==== <br />
<table> <br />
<tr> <br />
<td><p align="center">[[File:Outdata-m1C-mrcRefPhaseImageCreate.png]]<br> <br />
z=163<br></p> <br />
</td> <br />
<td><p align="left">Size<br> <br />
Mode<br> <br />
Min<br> <br />
Max<br> <br />
Mean<br> <br />
SD<br> <br />
SE<br></p> <br />
</td> <br />
<td><p align="left">( 56, 28, 326)<br> <br />
mrcFloatImage <br> <br />
-6135.9 (7, 7, 21)<br> <br />
30711 (32, 19, 239)<br> <br />
6192.24<br> <br />
5909.69<br> <br />
8.26577<br></p> <br />
</td> <br />
</tr> <br />
</table></div>
Kinoshita