http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?action=history&feed=atom&title=mrcRefUtil%28API%29 2026-06-04T14:52:15Z Revision history for this page on the wiki MediaWiki 1.23.6 http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcRefUtil(API)&diff=1778&oldid=prev 2014-07-28T07:44:04Z

<p>Created page with &quot;Closed/mrcRef/src/&#039;&#039;&#039;mrcRefUtil&#039;&#039;&#039; is API. == constant == #define mrcRefHeaderNumber 9; == struct == typedef double mrcRefDegCoordinate; typedef struct { mrcRefDegC...&quot;</p> <p><b>New page</b></p><div>Closed/mrcRef/src/'''mrcRefUtil''' is API.<br /> <br /> == constant ==<br /> #define mrcRefHeaderNumber 9;<br /> <br /> == struct ==<br /> typedef double mrcRefDegCoordinate; <br /> <br /> typedef struct {<br /> mrcRefDegCoordinate ip;<br /> mrcRefDegCoordinate iw;<br /> mrcRefDegCoordinate ia;<br /> mrcRefDegCoordinate dp;<br /> mrcRefDegCoordinate dw;<br /> mrcRefDegCoordinate da;<br /> mrcRefDegCoordinate wp;<br /> mrcRefDegCoordinate ww;<br /> mrcRefDegCoordinate wa;<br /> } mrcRefHeader;<br /> <br /> typedef struct {<br /> mrcRefDegCoordinate ip;<br /> mrcRefDegCoordinate iw;<br /> mrcRefDegCoordinate ia;<br /> mrcRefDegCoordinate dp;<br /> mrcRefDegCoordinate dw;<br /> mrcRefDegCoordinate da;<br /> mrcRefDegCoordinate wp;<br /> mrcRefDegCoordinate ww;<br /> mrcRefDegCoordinate wa;<br /> int mode;<br /> } mrcRefCorHeader;<br /> <br /> typedef struct {<br /> mrcRefDegCoordinate ip;<br /> mrcRefDegCoordinate iw;<br /> mrcRefDegCoordinate ia;<br /> mrcRefDegCoordinate dp;<br /> mrcRefDegCoordinate dw;<br /> mrcRefDegCoordinate da;<br /> mrcRefDegCoordinate wp;<br /> mrcRefDegCoordinate ww;<br /> mrcRefDegCoordinate wa;<br /> double sy;<br /> double ey;<br /> double refsize;<br /> int inverse;<br /> } mrcpwzCorHeader;<br /> <br /> == API ==<br /> #define surplus(a,b) (((a)/(b) &gt; 0)?((a)-floor((a)/(b))*(b) ):((a)-floor((a)/(b)+1)*(b)))<br /> #define NormalDegree(p) (((p) &gt; 0)?( ( surplus( ( (p)+180 ) ,360 )) - 180 ):( (surplus(((p)-180),360)) +180 ))<br /> <br /> ===General===<br /> void lRandShuffle(void);<br /> <br /> ===mrcImage Operation===<br /> double lmrcImageZ1Normalization(mrcImage* in ,int z);<br /> double lmrcImageNormalization(mrcImage* in ,int mode);<br /> void lmrcImageRectangleGet(mrcImage* out ,mrcImage* in ,int blx ,int bly ,int trx ,int try );<br /> void llmrcImageAdd(mrcImage* in1 ,mrcImage* in2);<br /> void llmrcImageSub(mrcImage*out ,mrcImage* in1 ,mrcImage* in2);<br /> void lmrcImageMultiplyingbyMrc(mrcImage* out ,mrcImage* in1 ,mrcImage* in2);<br /> void lmrcImageFTSetbyRArray(mrcImage* infft ,double** filterval ,int mode);<br /> double lmrcImageFTDataSetByRArray(double X ,double Y ,double Z ,double** filterval ,int mode);<br /> void lmrcImageMagnificationChange(mrcImage* out, mrcImage* in, double ratio);<br /> void lmrcImageCenterGet(mrcImage* out ,mrcImage* in ,int Nx ,int Ny ,int Nz ,float Cx ,float Cy ,float Cz ,int mode);<br /> void lmrcImageMultiplysingbyFile(mrcImage* in1 ,mrcImage* in2);<br /> <br /> ===mrcImage Statics===<br /> double lmrcImageStandardDeviation(mrcImage* in);<br /> <br /> ===Projection===<br /> void lmrcRefFilamentProjction(mrcImage* out, mrcImage* in, mrcRefDegCoordinate phi ,mrcRefDegCoordinate omega ,mrcRefDegCoordinate alpha ,int sizex ,int sizey );<br /> void lvec3mul(double* out ,double x ,double* in );<br /> void lvec3add(double* out ,double* in1 ,double* in2);<br /> void lvec3sub(double* out ,double* in1 ,double* in2);<br /> void lmrcPixelLiGet(mrcImage* mrc,<br /> mrcImageParaTypeReal x,<br /> mrcImageParaTypeReal y,<br /> mrcImageParaTypeReal z,<br /> double* data,<br /> mrcPixelDataType mode,<br /> mrcPixelDataHowToGet how);<br /> void lestimateradian(mrcRefDegCoordinate* lradian);<br /> <br /> ===Reference file Operation===<br /> void lmrc3DZ1Clear(mrcImage* in ,int z);<br /> void lmrcRefHeaderSet(mrcImage* out ,mrcRefHeader* in);<br /> void lmrcRefHeaderGet(mrcRefHeader* out ,mrcImage* in);<br /> void lmrc3DZ1ImgPut(mrcImage* out ,mrcImage* in ,int z);<br /> void lmrc3DZ1ImgGet(mrcImage* out ,mrcImage* in ,int z); <br /> void lmrc3DZ1FtPut(mrcImage* out ,mrcImage* in ,int Z);<br /> void lmrc3DZ1FtGet(mrcImage* out ,mrcImage* in ,int Z);<br /> double lmrcRef2DImgCorrelation(mrcImage* in1 ,mrcImage* in2 );<br /> void lmrcRefNormalization(mrcImage* in);<br /> int lmrcRefGetzCordinate(mrcRefDegCoordinate phi ,mrcRefDegCoordinate omega ,mrcRefDegCoordinate alpha ,mrcRefHeader* header);<br /> void lmrcRefGetdegreeCoordinate(mrcRefDegCoordinate* phi ,mrcRefDegCoordinate* omega ,mrcRefDegCoordinate* alpha ,int z ,mrcRefHeader* header);<br /> <br /> ===Reference statics===<br /> double lmrcRefSqrAverageZ1(mrcImage* in ,int z);<br /> double lmrcRefSqrAverage(mrcImage* in);<br /> double lmrcRefStandardDeviation(mrcImage* in);<br /> double lmrcRefVariationZ1(mrcImage* in ,int z);<br /> <br /> ===Reference Correlation File Operation===<br /> void lmrcRefCorHeaderSet(mrcImage* out ,mrcRefCorHeader* in);<br /> void lmrcRefCorHeaderGet(mrcRefCorHeader* out ,mrcImage* in);<br /> double lmrcRefCorrelationGet(mrcImage* in ,mrcRefDegCoordinate p1 ,mrcRefDegCoordinate w1 ,mrcRefDegCoordinate a1 ,mrcRefDegCoordinate p2 ,mrcRefDegCoordinate w2 ,mrcRefDegCoordinate a2 ,mrcRefCorHeader* header);<br /> int lmrcRefCorrelationGetCordinate(mrcRefDegCoordinate phi ,mrcRefDegCoordinate omega ,mrcRefDegCoordinate alpha ,mrcRefCorHeader* header );<br /> void lmrcRefCorrelationGetRefxCordinate(mrcRefDegCoordinate* phi ,mrcRefDegCoordinate* omega ,mrcRefDegCoordinate* alpha ,int x ,mrcImage* in ,mrcRefCorHeader* header);<br /> void lmrcRefCorrelationGetRefyCordinate(mrcRefDegCoordinate* phi ,mrcRefDegCoordinate* omega ,mrcRefDegCoordinate* alpha ,int y ,mrcImage* in ,mrcRefCorHeader* header);<br /> <br /> ===pwz correlation file operation===<br /> void lmrcpwzCorHeaderSet(mrcImage* out ,mrcpwzCorHeader* in);<br /> void lmrcpwzCorHeaderGet(mrcpwzCorHeader* out ,mrcImage* in);<br /> <br /> ===lmrcImageROInotChangeHeaderLength===<br /> <br /> extern double lbilinearInterpolation(double* image,<br /> unsigned long nx, unsigned long ny,<br /> double x, double y);<br /> <br /> extern double lcubicConvolutionInterpolation(double* image, <br /> unsigned long nx, unsigned long ny, <br /> double x, double y);<br /> extern double lpolyNominalInterpolation(double* image, <br /> unsigned long nx, unsigned long ny, <br /> double x, double y);<br /> extern void lpolyInitMatrix(double matrix[6][6], int m, int n);<br /> extern void lpolyInitVector(double vec[6], int m, int n, double* image, int nx, int ny);<br /> extern int lpolySolveMatrix(double matrix[6][6], double vec[6], double coefficient[6]);<br /> <br /> ===mrcImageUtilityforVariance===<br /> void lmrcImageFilteringbyFileForVariance(mrcImage* out ,mrcImage* in ,double** filterval ,int mode);<br /> <br /> ===lmrcImageCorrelationinSpace===<br /> double lmrcImageCorrelationinSpace(mrcImage* in,mrcImage* ref,int mode);</div>

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