mrcSinogramFET - Revision history

Kinoshita at 07:27, 29 September 2014

2014-09-29T07:27:10Z

Kinoshita: /* Execution example */

2014-09-29T07:08:58Z

‎Execution example

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Kinoshita: Created page with "'''mrcSinogramFET''' is Eos's Command that calculates the Sinogram Features. == List of option == === Main option ===

Option
2014-08-07T00:41:56Z

Created page with "'''mrcSinogramFET''' is Eos's Command that calculates the Sinogram Features. == List of option == === Main option === <table border="1"> <tr> <th>Option</t..."

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'''mrcSinogramFET''' is [[Eos]]'s [[Command]] that calculates the Sinogram Features.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[mrcImage]](Sinogram)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]](FET)</td>
<td>NULL</td>
</tr>
<tr>
<td>-ch</td>
<td>Optional</td>
<td>Output: [[mrcImage]](FET)</td>
<td>NULL</td>
</tr>
<tr>
<td>-sm</td>
<td>Optional</td>
<td>SmoothingFilter(move range of column smoothing by moving-average)</td>
<td>1</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<div>-ch 's file is used for Normalization.</div>
<br>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>
<br>

===Output file format===
<div>It outputs the following from each θ of Sinogram/</div>
<pre>
Width Skewness Kurtosis
. . .
. . .
. . .

</pre>
<div>The width is calculated from [[Kurtosis]] of [[Autocorrelation Value]] each θ.</div>
<br>

== Execution example ==
===[[:Media:Input-B120-sin.mrc | Input file]] image===
<table>
<tr>
<td>[[File:Input-B120-sin.png]]</td>
<td><p align="left">Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">0 (0, 0, 0)<br>
65535 (77, 34, 0)<br>
22776.7<br>
23232.9<br>
136.901<br></p>
</td>
</tr>
</table>
<br>

=== Example of options only essential ===
<div>-o 's file By [[mrcImageMakeDump]](m=8)</div>
<pre>
0.0614942 0.0325917 1.78762
0.0605712 0.0632562 1.93108
0.0639257 0.0789107 1.95908
0.0634946 -0.0737892 2.01836
0.0608277 0.202078 1.89107
0.0542547 0.144344 1.85886
0.0521331 0.10485 1.82517
0.0616536 0.0753629 1.8386
0.0620365 0.00882033 1.76001
0.0609849 -0.178435 1.8612

...

0.0594001 0.0137078 1.69186
0.0641533 -0.0104053 1.8428
0.0666817 -0.0237231 1.73576
0.0679321 0.135993 1.93031
0.0616724 0.0270474 1.75367
0.0614942 -0.0325917 1.78763
0.0605712 -0.0632519 1.93109
0.0639255 -0.0789105 1.95908
0.0634947 0.0737856 2.01836
0.0608276 -0.202075 1.89107

...

0.0577482 -0.05145 1.85321
0.060355 0.0692867 1.93637
0.0553964 0.0399175 1.82433
0.0564827 0.121926 1.75859
0.0580604 -0.00824017 1.65152
0.0594001 -0.0137042 1.69186
0.0640352 0.0111142 1.84374
0.0664901 0.0239018 1.73636
0.0676839 -0.135384 1.93055
0.0616659 -0.0268808 1.75356
</pre>
<br>

<div>-ch 's file By [[mrcImageMakeDump]](m=8)</div>
<pre>
-0.161654 0.264188 -0.499746
-0.23463 0.540136 0.936777
0.0305907 0.68101 1.21714
-0.00349375 -0.693129 1.81068
-0.214353 1.78939 0.536106
-0.734039 1.26984 0.213555
-0.901784 0.91444 -0.123757
-0.149048 0.649083 0.010706
-0.118778 0.0502702 -0.776229
-0.201925 -1.63483 0.237015

...

-0.327226 0.0942524 -1.45864
0.0485876 -0.12274 0.0527388
0.248493 -0.242586 -1.01904
0.347354 1.19469 0.929017
-0.147568 0.214295 -0.839686
-0.161656 -0.322394 -0.49972
-0.234634 -0.598304 0.9368
0.030576 -0.739215 1.21713
-0.00348786 0.634889 1.81067
-0.214361 -1.84757 0.536089

...

-0.457831 -0.492099 0.156978
-0.25172 0.594404 0.98975
-0.643776 0.330112 -0.132139
-0.557883 1.0681 -0.790415
-0.433148 -0.103256 -1.86261
-0.327223 -0.152427 -1.45862
0.0392519 0.0709124 0.0621676
0.233343 0.185987 -1.01302
0.327728 -1.24742 0.931392
-0.148078 -0.271002 -0.84082
</pre>
<br>

=== Option -sm===
====Case: sm=2====
<div>-o 's file By [[mrcImageMakeDump]](m=8)</div>
<pre>
0.0918657 0.0344836 2.73613
0.0913183 0.0795521 2.8249
0.0925341 0.102712 2.91063
0.0939957 0.0341889 2.95426
0.0924467 0.0957727 2.92026
0.0878268 0.204839 2.84051
0.0834795 0.156225 2.80756
0.087179 0.121735 2.79743
0.0921307 0.0737197 2.76485
0.0917963 -0.0531793 2.77615

...

0.0890158 0.0426021 2.63723
0.0920623 0.0332794 2.73287
0.0957031 0.0145639 2.75482
0.0975925 0.0877632 2.79858
0.0950878 0.113149 2.80753
0.0918689 0.028856 2.73619
0.0913183 -0.0162937 2.8249
0.0925339 -0.0394531 2.91063
0.0939957 0.0290656 2.95426
0.0924467 -0.0325166 2.92026

...

0.0912556 -0.0290791 2.76966
0.0906757 -0.0484107 2.77224
0.0893372 0.0405465 2.86033
0.0881613 0.0862302 2.8459
0.0862251 0.11255 2.75701
0.0875571 0.0884708 2.6706
0.0890158 0.0206559 2.63723
0.0920033 0.0303331 2.73334
0.0955483 0.0491361 2.75559
0.0973726 -0.024113 2.799
0.0949605 -0.0495043 2.8076
</pre>

<div>-ch 's file By [[mrcImageMakeDump]](m=8)</div>
<pre>
-0.157651 -0.0041597 -0.843173
-0.201705 0.490999 0.274878
-0.103854 0.745449 1.35475
0.0137921 -0.00739793 1.9044
-0.110882 0.669213 1.47605
-0.482721 1.86751 0.471514
-0.832616 1.33339 0.0564812
-0.534862 0.954453 -0.0711068
-0.136321 0.42692 -0.481491
-0.163234 -0.967296 -0.339148

...

-0.387022 0.0850372 -2.08895
-0.141824 -0.0173904 -0.884264
0.151211 -0.223014 -0.607772
0.30328 0.581214 -0.0566197
0.101689 0.860117 0.0561869
-0.157392 -0.0659893 -0.842443
-0.201708 -0.56204 0.274908
-0.103864 -0.816489 1.35476
0.0137873 -0.0636858 1.90439
-0.110883 -0.740279 1.47604

...

-0.253423 -0.914905 -0.388412
-0.361154 0.062452 0.721254
-0.455798 0.564371 0.539412
-0.611632 0.853537 -0.580257
-0.504425 0.588987 -1.66867
-0.387021 -0.156082 -2.08894
-0.146574 -0.0497604 -0.878321
0.138748 0.156824 -0.598054
0.285579 -0.64795 -0.0513402
0.0914399 -0.926919 0.0569677
</pre>
<br>