mrcSinogramFETcalcSDforNormalize - Revision history

Kinoshita: /* s=3 */

2014-08-07T00:58:06Z

‎s=3

Kinoshita: /* s=2 */

2014-08-07T00:57:51Z

‎s=2

Kinoshita: /* -m details */

2014-08-07T00:57:19Z

‎-m details

Kinoshita: Created page with "'''mrcSinogramFETcalcSDforNormalize''' is Eos's Command. == List of option == === Main option ===

Option Essentia..."
2014-08-07T00:53:02Z

Created page with "'''mrcSinogramFETcalcSDforNormalize''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essentia..."

New page
'''mrcSinogramFETcalcSDforNormalize''' is [[Eos]]'s [[Command]].

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Optional</td>
<td>Input: [[mrcImage]](FET)</td>
<td>NULL</td>
</tr>
<tr>
<td>-s</td>
<td>Optional</td>
<td>selectFETfile</td>
<td>1</td>
</tr>
<tr>
<td>-l</td>
<td>Essential</td>
<td>SDlibraryFile: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Optional</td>
<td>Output: [[mrcImage]](SD)</td>
<td>NULL</td>
</tr>
<tr>
<td>-ow</td>
<td>Optional</td>
<td>Output: [[mrcImage]](Weight)</td>
<td></td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<br>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>SDlibraryFileから読み出して-o, -owへ出力する(必須オプション: -l)</td>
</tr>
<tr>
<td>1</td>
<td>SDlibraryFileを上書きする(必須オプション: -s, -i, -l)</td>
</tr>
</table>
<div>SDlibraryFileは[[array2mrc]]にて作成できる(サイズ: x=(Featuresの数 + 1), y=6(-ow を使用する場合はy=8), z=0, data: 全て0.0)</div>
<br>

===-s details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>noise-free refarence FETdata</td>
</tr>
<tr>
<td>1</td>
<td>no-smoothing FET data</td>
</tr>
<tr>
<td>Otherwise</td>
<td>smoothed FET data</td>
</tr>
</table>
<br>

== Execution example ==
===Input file's data===
<div>-i 's file</div>
<div>[[:Media:Input-1VOM-N-Rot-2D-FET.radon|file0]]</div>
<div>[[:Media:Input-1VOM-N-2D-FET.radon|file1]]</div>
<div>[[:Media:Input-1VOM-2D-Sm1-FET.radon|file2]]: Smoothing data of file1</div>
<div>[[:Media:Input-1VOM-2D-Sm3-FET.radon|file3]]: Smoothing data of file1</div>
<br>

<div>-l 's file</div>
<div>[[:Media:Input-0data.mrc|file4]]: by [[mrcImageMakeDump]](m=8)</div>
<pre>
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
</pre>
<div>[[:Media:Input-1VOM-N-2D-SDlib.mrc|file5]]: by [[mrcImageMakeDump]](m=8)</div>
<pre>
1 6.10919e-05 0.0512343 0.0529243
1 0.0402937 -0.000261387 2.38748
1 5.77048e-05 0.0515095 0.053126
1 0.0401005 -0.000252081 2.39499
1 2.88663e+08 2.28348e+08 2.43567e+08
1 37006.6 23393.5 24685.6
1 4.11992e-05 0.0337029 0.0439789
1 0.0440661 -0.00141426 2.35982
</pre>
<br>

=== Example of options only essential ===
<div>-l: using file5</div>
<div>-o 's data by [[mrcImageMakeDump]](m=8)</div>
<pre>
2.06095e+08 1.49409e+08 2.0163e+08
</pre>
<br>

<div>-ow 's data by [[mrcImageMakeDump]](m=8)</div>
<pre>
0 2.24369e-10 2.17289e-10
</pre>
<br>

=== Option -m===
====Case: m=1====
<div>-l: using file4</div>
=====Case: s=0=====
<div>-i: using file0</div>
<div>-l 's data by [[mrcImageMakeDump]](m=8)</div>
<pre>
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
1 4.11992e-05 0.0337029 0.0439789
1 0.0440661 -0.00141426 2.35982
</pre>
<br>

=====Case: s=1=====
<div>-i: using file1</div>
<div>-l 's data by [[mrcImageMakeDump]](m=8)</div>
<pre>
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
1 2.88663e+08 2.28348e+08 2.43567e+08
1 37006.6 23393.5 24685.6
0 0 0 0
0 0 0 0
</pre>
<br>

=====s=2=====
<div>-i: file2を使用して実行</div>
<div>-l 's data by [[mrcImageMakeDump]](m=8)</div>
<pre>
0 0 0 0
0 0 0 0
1 5.77048e-05 0.0515095 0.053126
1 0.0401005 -0.000252081 2.39499
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
</pre>
<br>

=====s=3=====
<div>-i: file3を使用して実行</div>
<div>-l 's data by [[mrcImageMakeDump]](m=8)</div>
<pre>
1 6.10919e-05 0.0512343 0.0529243
1 0.0402937 -0.000261387 2.38748
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
0 0 0 0
</pre>
<br>