mrcSinogramFETcorrelationMap - Revision history

Kinoshita: Created page with "'''mrcSinogramFETcorrelationMap''' is Eos's Command that performs correlation between SinogramFET files. == List of option == === Main option ===
2014-08-07T01:18:45Z
Created page with "'''mrcSinogramFETcorrelationMap''' is Eos's Command that performs correlation between SinogramFET files. == List of option == === Main option === <table border="1"..."
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'''mrcSinogramFETcorrelationMap''' is [[Eos]]'s [[Command]] that performs correlation between SinogramFET files.

== List of option ==
=== Main option ===
<table border="1">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i1</td>
<td>Essential</td>
<td>Input1: [[mrcImage]](FET)</td>
<td>NULL</td>
</tr>
<tr>
<td>-i2</td>
<td>Essential</td>
<td>Input2: [[mrcImage]](FET)</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-w</td>
<td>Optional</td>
<td>WeightDataFile: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-sd</td>
<td>Optional</td>
<td>readSDfileForNormalize: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-nm</td>
<td>Optional</td>
<td>normalizemode</td>
<td>0</td>
</tr>
<tr>
<td>-cmode</td>
<td>Optional</td>
<td>calculateMode</td>
<td>0</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</table>
<br>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>default, normal distance correlation</td>
</tr>
<tr>
<td>1</td>
<td>average of counter pixel presents same line</td>
</tr>
</table>
<br>

===-nm details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>normalize free (prenormalized input data)</td>
</tr>
<tr>
<td>1</td>
<td>normalize implementation</td>
</tr>
</table>
<br>

===-cmode details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>distance calculation</td>
</tr>
<tr>
<td>1</td>
<td>difference product </td>
</tr>
</table>
<br>

== Execution example ==
===Input file's data===
<div>[[:Media:Input-1VOM-N-2D-FET.radon | -i1file]]'s data</div>
<div>By [[mrcImageMakeDump]]</div>
<pre>
0.0528259 0.287465 2.43992
0.0530244 0.293207 2.43615
0.0531626 0.296749 2.4324
0.0536801 0.289733 2.40744
0.0538179 0.298354 2.41023
0.0545124 0.322229 2.39943
0.0546532 0.328165 2.39395
0.054684 0.334097 2.39568
0.0545885 0.333984 2.39575
0.0543876 0.33627 2.40106

...

0.0518319 -0.232946 2.44283
0.0522862 -0.247554 2.43665
0.0525356 -0.256483 2.43349
0.0525809 -0.26767 2.43681
0.0527164 -0.282587 2.43866
0.0528259 -0.287465 2.43992
0.0530244 -0.293207 2.43615
0.0531626 -0.296749 2.4324
0.0536801 -0.289733 2.40744
0.0538179 -0.298354 2.41023

...

0.0502116 0.210372 2.45587
0.0505199 0.218583 2.45832
0.0508604 0.223915 2.45576
0.0510345 0.229516 2.45911
0.0512054 0.23358 2.46195
0.0518319 0.232946 2.44283
0.0522862 0.247554 2.43665
0.0525356 0.256483 2.43349
0.0525809 0.26767 2.43681
0.0527164 0.282587 2.43866
</pre>
<br>

<div>[[:Media:Input-1VOM-N-2D1-FET.radon | -i2file]]'s data</div>
<div>By [[mrcImageMakeDump]]</div>
<pre>
0.0312436 0.00405655 2.1138
0.0309486 0.00536587 2.11108
0.030385 0.0134176 2.1273
0.0301351 0.0113019 2.12341
0.029905 0.0129536 2.11894
0.029792 0.014818 2.11309
0.0296152 0.0185676 2.11023
0.0293773 0.0225842 2.10846
0.0290746 0.0236446 2.10554
0.0282033 0.00149837 2.12154

...

0.0324979 -0.00814629 2.13981
0.0322146 -0.00628055 2.13143
0.0319646 -0.00527629 2.12383
0.0317294 -0.00305081 2.11731
0.0314994 -0.0027773 2.11493
0.0312436 -0.00405655 2.1138
0.0309486 -0.00536589 2.11108
0.030177 -0.0134175 2.1273
0.0299496 -0.0113019 2.12341
0.0297049 -0.0129536 2.11894

...

0.0352774 0.0116898 2.13758
0.0347354 0.0224429 2.13906
0.0343515 0.022816 2.13214
0.0338841 0.0255366 2.13049
0.0334142 0.0271548 2.12856
0.0324979 0.0081464 2.13981
0.0322146 0.00628052 2.13143
0.0319646 0.00527622 2.12383
0.0317294 0.00305083 2.11731
0.0314994 0.00277731 2.11493
</pre>
<br>

=== Example of options only essential ===
<table>
<tr>
<td>[[File:Outdata-mrcSinogramFETcorrelationMap.png]]</td>
<td><p align="left">Size<br>
Mode<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 360, 360, 1)<br>
mrcFloatRadonImage <br>
-1.34128 (320, 136, 0)<br>
-8.61473e-09 (90, 0, 0)<br>
-0.405053<br>
0.245267<br>
0.000681297<br></p>
</td>
</tr>
</table>
<br>

=== Option -nm===
====Case: nm=1====
<table>
<tr>
<td>[[File:Outdata-nm1-mrcSinogramFETcorrelationMap.png]]</td>
<td><p align="left">Size<br>
Mode<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 360, 360, 1)<br>
mrcFloatRadonImage <br>
-7.50257 (352, 136, 0)<br>
-4.84288e-08 (90, 0, 0)<br>
-3.32448<br>
1.69129<br>
0.00469802<br></p>
</td>
</tr>
</table>
<br>

=== Option -cmode===
====Case: cmode=1====
<table>
<tr>
<td>[[File:Outdata-cmode1-mrcSinogramFETcorrelationMap.png]]</td>
<td><p align="left">Size<br>
Mode<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 360, 360, 1)<br>
mrcFloatRadonImage <br>
-43569.3 (122, 46, 0)<br>
10172.8 (90, 0, 0)<br>
-633.964<br>
3286.71<br>
9.12974<br></p>
</td>
</tr>
</table>
<br>

=== Option -m===
====Case: m=1====
<table>
<tr>
<td>[[File:Outdata-m1-mrcSinogramFETcorrelationMap.png]]</td>
<td><p align="left">Size<br>
Mode<br>
Min<br>
Max<br>
Mean<br>
SD<br>
SE<br></p>
</td>
<td><p align="left">( 360, 360, 1)<br>
mrcFloatRadonImage <br>
-1.34127 (320, 136, 0)<br>
-1.69383e-08 (90, 0, 0)<br>
-0.405342<br>
0.244789<br>
0.000679969<br></p>
</td>
</tr>
</table>
<br>