http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?action=history&feed=atom&title=mrcSinogramFETreferredCorrelation mrcSinogramFETreferredCorrelation - Revision history 2026-05-04T15:20:50Z Revision history for this page on the wiki MediaWiki 1.23.6 http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcSinogramFETreferredCorrelation&diff=2997&oldid=prev Kinoshita: Created page with "'''mrcSinogramFETreferredCorrelation''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essenti..." 2014-08-07T01:26:05Z <p>Created page with &quot;&#039;&#039;&#039;mrcSinogramFETreferredCorrelation&#039;&#039;&#039; is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>&#039;s <a href="/Eos/index.php/Command" title="Command">Command</a>. == List of option == === Main option === &lt;table border=&quot;1&quot;&gt; &lt;tr&gt; &lt;th&gt;Option&lt;/th&gt; &lt;th&gt;Essenti...&quot;</p> <p><b>New page</b></p><div>'''mrcSinogramFETreferredCorrelation''' is [[Eos]]'s [[Command]].<br /> <br /> <br /> == List of option ==<br /> === Main option ===<br /> &lt;table border=&quot;1&quot;&gt;<br /> &lt;tr&gt; <br /> &lt;th&gt;Option&lt;/th&gt; <br /> &lt;th&gt;Essential/Optional&lt;/th&gt; <br /> &lt;th&gt;Description&lt;/th&gt; <br /> &lt;th&gt;Default&lt;/th&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-i&lt;/td&gt; <br /> &lt;td&gt;Essential&lt;/td&gt; <br /> &lt;td&gt;Input: [[ASCII]] (File List)&lt;/td&gt; <br /> &lt;td&gt;NULL&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-iRef&lt;/td&gt; <br /> &lt;td&gt;Essential&lt;/td&gt; <br /> &lt;td&gt;Reference: [[ASCII]] (File List)&lt;/td&gt; <br /> &lt;td&gt;NULL&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-iEuler&lt;/td&gt; <br /> &lt;td&gt;Essential&lt;/td&gt; <br /> &lt;td&gt;InputEulerAngleDataFile: [[ASCII]]&lt;/td&gt; <br /> &lt;td&gt;NULL&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-o&lt;/td&gt; <br /> &lt;td&gt;Essential&lt;/td&gt; <br /> &lt;td&gt;OutputEulerAngleDataFileList: [[ASCII]]&lt;/td&gt; <br /> &lt;td&gt;NULL&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-nm&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;normalizeMode&lt;/td&gt; <br /> &lt;td&gt;0&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-om&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;outputListMode&lt;/td&gt; <br /> &lt;td&gt;2&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-tn&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;top number&lt;/td&gt; <br /> &lt;td&gt;10&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-refR&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;reference select Range&lt;/td&gt; <br /> &lt;td&gt;15&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-w&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;CorrelationCalcWeight&lt;/td&gt; <br /> &lt;td&gt;NULL&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-c&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;ConfigurationFile&lt;/td&gt; <br /> &lt;td&gt;NULL&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-m&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;Mode&lt;/td&gt; <br /> &lt;td&gt;0&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;-h&lt;/td&gt; <br /> &lt;td&gt;Optional&lt;/td&gt; <br /> &lt;td&gt;Help&lt;/td&gt; <br /> &lt;td&gt;　&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt; <br /> &lt;br&gt;<br /> <br /> === -m details ===<br /> &lt;table border=&quot;1&quot;&gt;<br /> &lt;tr&gt; <br /> &lt;th&gt;Value&lt;/th&gt; <br /> &lt;th&gt;Description&lt;/th&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;0&lt;/td&gt; <br /> &lt;td&gt;&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt; <br /> &lt;br&gt;<br /> <br /> ===-nm details===<br /> &lt;table border=&quot;1&quot;&gt;<br /> &lt;tr&gt; <br /> &lt;th&gt;Value&lt;/th&gt; <br /> &lt;th&gt;Description&lt;/th&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;0&lt;/td&gt; <br /> &lt;td&gt;normalize with average and SD of whole inputfile&lt;br&gt;<br /> references and datas will be normalize independently&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;1&lt;/td&gt; <br /> &lt;td&gt;for using normalized inputFETdata&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt; <br /> &lt;br&gt;<br /> <br /> ===-om details===<br /> &lt;table border=&quot;1&quot;&gt;<br /> &lt;tr&gt; <br /> &lt;th&gt;Value&lt;/th&gt; <br /> &lt;th&gt;Description&lt;/th&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;0&lt;/td&gt; <br /> &lt;td&gt;output anglelist only top1 angle set&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;1&lt;/td&gt; <br /> &lt;td&gt;selected angle sets&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;tr&gt; <br /> &lt;td&gt;2&lt;/td&gt; <br /> &lt;td&gt;top -tn angle sets&lt;/td&gt; <br /> &lt;/tr&gt; <br /> &lt;/table&gt; <br /> &lt;div&gt;option -tn,-refR are for outputListMode!=0&lt;br&gt;<br /> -tn : number of referenceMaps be considerd in selection&lt;br&gt;<br /> -refR : step size when generate referenceMapSet from 3D image is recommend&lt;/div&gt;<br /> &lt;br&gt;<br /> <br /> ===-i, -iRef format===<br /> &lt;pre&gt;<br /> FETfile1<br /> FETfile2<br /> .<br /> .<br /> <br /> &lt;/pre&gt;<br /> &lt;br&gt;<br /> <br /> ===-iEuler format===<br /> &lt;pre&gt;<br /> file Mode Rot1 Rot2 Rot3<br /> . . . . .<br /> . . . . .<br /> <br /> &lt;/pre&gt;<br /> &lt;br&gt;<br /> <br /> == Execution example ==<br /> ===Input file's data===<br /> &lt;div&gt;-i 's data&lt;/div&gt;<br /> &lt;pre&gt;<br /> Input-1VOM-N-2D-FET.radon<br /> Input-1VOM-N-2D1-FET.radon<br /> Input-1VOM-N-Rot2-2D-FET.radon<br /> <br /> &lt;/pre&gt;<br /> &lt;br&gt;<br /> <br /> &lt;div&gt;-iRef 's data&lt;/div&gt;<br /> &lt;pre&gt;<br /> Input-1VOM-2D-FET.radon<br /> Input-1VOM-Rot-2D-FET.radon<br /> Input-1VOM-Rot3-2D-FET.radon<br /> <br /> &lt;/pre&gt;<br /> &lt;br&gt;<br /> <br /> &lt;div&gt;iEuler 's data&lt;/div&gt;<br /> &lt;pre&gt;<br /> Input-1VOM-N-2D-FET.radon YOYS 0 0 0<br /> Input-1VOM-N-2D1-FET.radon YOYS 90 0 90<br /> Input-1VOM-N-Rot2-2D-FET.radon YOYS 0 0 45<br /> <br /> &lt;/pre&gt;<br /> &lt;br&gt;<br /> <br /> === Example of options only essential ===<br /> &lt;pre&gt;<br /> Input-1VOM-N-2D-FET.radon YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 <br /> Input-1VOM-N-2D1-FET.radon YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 <br /> Input-1VOM-N-Rot2-2D-FET.radon YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 <br /> &lt;/pre&gt;<br /> &lt;br&gt;<br /> <br /> === Option -nm===<br /> ====Case: nm=1====<br /> &lt;pre&gt;<br /> Input-1VOM-N-2D-FET.radon YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 <br /> Input-1VOM-N-2D1-FET.radon YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 YOYS 0.000000 0.000000 -358.000000 1000.000000 2 YOYS 0.000000 0.000000 0.000000 0.000000 -1 YOYS 0.000000 0.000000 -360.000000 1000.000000 0 YOYS 90.000000 0.000000 -359.000000 1000.000000 1 <br /> Input-1VOM-N-Rot2-2D-FET.radon YOYS 90.000000 0.000000 -354.000000 118.737266 1 YOYS 0.000000 0.000000 -233.000000 169.285555 2 YOYS 0.000000 0.000000 -182.000000 210.853077 0 YOYS 90.000000 0.000000 -354.000000 118.737266 1 YOYS 0.000000 0.000000 -233.000000 169.285555 2 YOYS 0.000000 0.000000 -182.000000 210.853077 0 YOYS 90.000000 0.000000 -354.000000 118.737266 1 YOYS 0.000000 0.000000 -233.000000 169.285555 2 YOYS 0.000000 0.000000 -182.000000 210.853077 0 YOYS 90.000000 0.000000 -354.000000 118.737266 1 <br /> &lt;/pre&gt;<br /> &lt;br&gt;<br /> <br /> &lt;div&gt;In the following, Setting at nm=1&lt;/div&gt;<br /> <br /> === Option -tn===<br /> ====tn=1====<br /> &lt;pre&gt;<br /> Input-1VOM-N-2D-FET.radon YOYS 0.000000 0.000000 -360.000000 1000.000000 0 <br /> Input-1VOM-N-2D1-FET.radon YOYS 0.000000 0.000000 -360.000000 1000.000000 0 <br /> Input-1VOM-N-Rot2-2D-FET.radon YOYS 90.000000 0.000000 -354.000000 118.737266 1 <br /> &lt;/pre&gt;<br /> &lt;br&gt;<br /> <br /> === Option -om===<br /> ====om=0====<br /> &lt;pre&gt;<br /> Input-1VOM-N-2D-FET.radon YOYS 0.000000 0.000000 2.000000 dis 1000.000000 0<br /> Input-1VOM-N-2D1-FET.radon YOYS 0.000000 0.000000 2.000000 dis 1000.000000 0<br /> Input-1VOM-N-Rot2-2D-FET.radon YOYS 90.000000 0.000000 -354.000000 dis 118.737266 1<br /> &lt;/pre&gt;<br /> &lt;br&gt;</div> Kinoshita