http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?action=history&feed=atom&title=pdbCAOnly
pdbCAOnly - Revision history
2026-05-04T15:20:50Z
Revision history for this page on the wiki
MediaWiki 1.23.6
http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=pdbCAOnly&diff=3113&oldid=prev
Kinoshita at 00:12, 8 August 2014
2014-08-08T00:12:58Z
<p></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 00:12, 8 August 2014</td>
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<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>'''pdbCAOnly''' is<del class="diffchange diffchange-inline">[[PDB]]からα炭素だけを抜き出す </del>[[Eos]]'s [[Command]].</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>'''pdbCAOnly''' is [[Eos]]'s [[Command]] <ins class="diffchange diffchange-inline">that extracts only the Alpha-Carbon</ins>.</div></td></tr>
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Kinoshita
http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=pdbCAOnly&diff=3086&oldid=prev
Kinoshita: /* Execution example */
2014-08-07T06:45:53Z
<p><span dir="auto"><span class="autocomment">Execution example</span></span></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 06:45, 7 August 2014</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>== Execution example ==</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>== Execution example ==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===[[:Media:Input-121P.pdb.zip | Input file]] details===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>===[[:Media:Input-121P.pdb.zip | Input file]] details===</div></td></tr>
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Kinoshita
http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=pdbCAOnly&diff=3085&oldid=prev
Kinoshita: Created page with "'''pdbCAOnly''' isPDBからα炭素だけを抜き出す Eos's Command. == List of option == <table border="1"> <div align="left"> <tr> <th>Option</th>..."
2014-08-07T06:43:24Z
<p>Created page with "'''pdbCAOnly''' is<a href="/Eos/index.php/PDB" title="PDB">PDB</a>からα炭素だけを抜き出す <a href="/Eos/index.php/Eos" title="Eos">Eos</a>'s <a href="/Eos/index.php/Command" title="Command">Command</a>. == List of option == <table border="1"> <div align="left"> <tr> <th>Option</th>..."</p>
<p><b>New page</b></p><div>'''pdbCAOnly''' is[[PDB]]からα炭素だけを抜き出す [[Eos]]'s [[Command]].<br />
<br />
<br />
== List of option ==<br />
<table border="1"><br />
<div align="left"><br />
<tr><br />
<th>Option</th><br />
<th>Essential/Optional</th><br />
<th>Description</th><br />
<th>Default</th><br />
</tr><br />
<tr><br />
<td>-i</td><br />
<td>Essential</td><br />
<td>Input: [[PDB]]</td><br />
<td>NULL</td><br />
</tr><br />
<tr><br />
<td>-o</td><br />
<td>Optional</td><br />
<td>Output: [[PDB]]</td><br />
<td>NULL</td><br />
</tr><br />
<tr><br />
<td>-oCoord</td><br />
<td>Optional</td><br />
<td>Output: Coordinates(x, y, z): [[ASCII]]</td><br />
<td>NULL</td><br />
</tr><br />
<tr> <br />
<td>-c</td> <br />
<td>Optional</td> <br />
<td>ConfigurationFile</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-m</td> <br />
<td>Optional</td> <br />
<td>Mode</td> <br />
<td>0</td> <br />
</tr> <br />
<tr><br />
<td>-h</td><br />
<td>Optional</td><br />
<td>Help</td><br />
<td> </td><br />
</tr><br />
</div><br />
</table><br />
<br><br />
<br />
=== -m details ===<br />
<table border="1"><br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>0</td> <br />
<td></td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
== Execution example ==<br />
===[[:Media:Input-121P.pdb.zip | Input file]] details===<br />
[[File:Inputdata-pdbCAOnly.png]]<br />
<br><br />
<br><br />
[[File:Inputdata-Info-pdbCAOnly.png]]<br />
<br><br />
<br><br />
<br />
===Case: Options only essential===<br />
<div>-o 's image</div><br />
[[File:Outputdata-pdbCAOnly.png]]<br />
<br><br />
<br><br />
[[File:Outputdata-Info-pdbCAOnly.png]]<br />
<br><br />
<br><br />
<br />
<div>-oCoord 's data</div><br />
<pre><br />
-5.913, 31.928, -6.676<br />
-4.759, 28.930, -4.751<br />
-4.531, 29.674, -1.062<br />
-2.465, 27.513, 1.336<br />
-3.586, 27.580, 4.978<br />
-0.458, 26.983, 7.005<br />
-0.267, 26.691, 10.787<br />
2.893, 27.179, 12.917<br />
2.792, 25.223, 16.192<br />
5.273, 24.275, 18.922<br />
<br />
...<br />
<br />
8.007, 26.321, 0.697<br />
8.752, 22.660, 1.449<br />
5.506, 22.633, 3.471<br />
3.622, 24.164, 0.512<br />
5.079, 21.428, -1.780<br />
3.951, 18.742, 0.732<br />
0.404, 20.135, 0.490<br />
0.711, 20.050, -3.346<br />
1.520, 16.308, -3.145<br />
-1.217, 15.280, -0.638<br />
</pre><br />
<br></div>
Kinoshita