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pdbCoordAdd - Revision history
2026-08-13T14:49:00Z
Revision history for this page on the wiki
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http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=pdbCoordAdd&diff=3091&oldid=prev
Kinoshita: Created page with "'''pdbCoordAdd''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essential/Optional</th>..."
2014-08-07T23:44:09Z
<p>Created page with "'''pdbCoordAdd''' is <a href="/Eos/index.php/Eos" title="Eos">Eos</a>'s <a href="/Eos/index.php/Command" title="Command">Command</a>. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essential/Optional</th>..."</p>
<p><b>New page</b></p><div>'''pdbCoordAdd''' is [[Eos]]'s [[Command]].<br />
<br />
<br />
== List of option ==<br />
=== Main option ===<br />
<table border="1"><br />
<tr> <br />
<th>Option</th> <br />
<th>Essential/Optional</th> <br />
<th>Description</th> <br />
<th>Default</th> <br />
</tr> <br />
<tr> <br />
<td>-i1</td> <br />
<td>Essential</td> <br />
<td>Input1: [[PDB]]</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-i2</td> <br />
<td>Essential</td> <br />
<td>Input2: [[PDB]]</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-o</td> <br />
<td>Essential</td> <br />
<td>Output: [[PDB]]</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-c</td> <br />
<td>Optional</td> <br />
<td>ConfigurationFile</td> <br />
<td>NULL</td> <br />
</tr> <br />
<tr> <br />
<td>-m</td> <br />
<td>Optional</td> <br />
<td>Mode</td> <br />
<td>0</td> <br />
</tr> <br />
<tr> <br />
<td>-h</td> <br />
<td>Optional</td> <br />
<td>Help</td> <br />
<td> </td> <br />
</tr> <br />
</table> <br />
<div>In2 is a subgroup of In1. </div><br />
<br><br />
<br />
=== -m details ===<br />
<table border="1"><br />
<tr> <br />
<th>Value</th> <br />
<th>Description</th> <br />
</tr> <br />
<tr> <br />
<td>0</td> <br />
<td></td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
== Execution example ==<br />
===[[:Media:Input-121P-Two.pdb.zip|Input file1]] image===<br />
<table> <br />
<tr> <br />
<td>[[File:Input-121P-Two.png]]</td> <br />
<td><p align="left">Gravity Centre(CA)<br> <br />
Atom far from Centre(CA)<br> <br />
Atom far from Centre(CA, Axis)<br> </p><br />
</td> <br />
<td><p align="left">3.281389e+00 2.225817e+01 -4.999687e-04<br> <br />
3.798185e+01<br> <br />
27.38 27.08 34.08<br></p><br />
</td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
===[[:Media:Input-121P-T2.pdb.zip|Input file2]] image===<br />
<table> <br />
<tr> <br />
<td>[[File:Input-121P-PDB2.png]]</td> <br />
<td><p align="left">Gravity Centre(CA)<br> <br />
Atom far from Centre(CA)<br> <br />
Atom far from Centre(CA, Axis)<br> </p><br />
</td> <br />
<td><p align="left">6.053012e+00 2.519590e+01 1.189075e+01<br> <br />
3.286664e+01 <br> <br />
24.77 23.85 28.04 <br></p><br />
</td> <br />
</tr> <br />
</table> <br />
<br><br />
<br />
=== Case: Options only essential ===<br />
<table> <br />
<tr> <br />
<td>[[File:Outdata-pdbCoordAdd.png]]</td> <br />
<td><p align="left">Gravity Centre(CA)<br> <br />
Atom far from Centre(CA)<br> <br />
Atom far from Centre(CA, Axis)<br> </p><br />
</td> <br />
<td><p align="left">6.307895e+00 3.485612e+01 -5.945876e+00<br> <br />
7.693007e+01<br> <br />
55.02 63.23 62.21<br> </p><br />
</td> <br />
</tr> <br />
</table><br />
<br></div>
Kinoshita