pdbSecondaryStructurePrint - Revision history

Kinoshita: Created page with "'''pdbSecondaryStructurePrint''' is Eos's Command that prints Secondary Structure. == List of option == === Main option ===
..."
2014-08-18T00:22:01Z

Created page with "'''pdbSecondaryStructurePrint''' is Eos's Command that prints Secondary Structure. == List of option == === Main option === <table border="1"> <div align="left">..."

New page
'''pdbSecondaryStructurePrint''' is [[Eos]]'s [[Command]] that prints Secondary Structure.

== List of option ==
=== Main option ===
<table border="1">
<div align="left">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[PDB]]</td>
<td>stdin</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[ASCII]]</td>
<td>stdout</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</div>
</table>

=== -m details ===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td></td>
</tr>
</table>

== Execution example ==
===[[:Media:Input-121P.pdb.zip|Input file]] details===
<div>[[File:121p.png]]<br>
<br>
[[File:121p-Info.png]]</div>
<br>

=== Case: Options only essential ===
<div>Output as the following.</div>
<pre>
HELIX 1 A1 LYS A 16 GLN A 25 1 10
HELIX 2 A2 SER A 65 THR A 74 1 10
HELIX 3 A3 THR A 87 VAL A 103 1 17
HELIX 4 A4 SER A 127 TYR A 137 1 11
HELIX 5 A5 VAL A 152 ARG A 164 1 13
SHEET 1 S 6 GLU A 37 ILE A 46 0
SHEET 2 S 6 GLU A 49 THR A 58 -1 O LEU A 53 N LYS A 42
SHEET 3 S 6 THR A 2 VAL A 9 1 N LEU A 6 O ASP A 54
SHEET 4 S 6 GLY A 77 ALA A 83 1 N LEU A 79 O VAL A 7
SHEET 5 S 6 MET A 111 ASN A 116 1 N VAL A 114 O CYS A 80
SHEET 6 S 6 TYR A 141 GLU A 143 1 N ILE A 142 O LEU A 113
</pre>
<br>