tiff2mrc - Revision history

Kinoshita: Created page with "'''tiff2mrc''' is Eos's Command. == List of option == === Main option ===

Option Essential..."
2014-08-18T05:08:25Z

Created page with "'''tiff2mrc''' is Eos's Command. == List of option == === Main option === <table border="1"> <div align="left"> <tr> <th>Option</th> <th>Essential..."

New page
'''tiff2mrc''' is [[Eos]]'s [[Command]].

== List of option ==
=== Main option ===
<table border="1">
<div align="left">
<tr>
<th>Option</th>
<th>Essential/Optional</th>
<th>Description</th>
<th>Default</th>
</tr>
<tr>
<td>-i</td>
<td>Essential</td>
<td>Input: [[tiff]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-o</td>
<td>Essential</td>
<td>Output: [[mrcImage]]</td>
<td>NULL</td>
</tr>
<tr>
<td>-r</td>
<td>Optional</td>
<td>Resolution[A]</td>
<td>2.5</td>
</tr>
<tr>
<td>-t</td>
<td>Optional</td>
<td>x OptimalTime</td>
<td>1.0</td>
</tr>
<tr>
<td>-d</td>
<td>Optional</td>
<td>Directory Number</td>
<td>0</td>
</tr>
<tr>
<td>-I</td>
<td>Optional</td>
<td>Inverse(Black<->White)</td>
<td>0</td>
</tr>
<tr>
<td>-Signed</td>
<td>Optional</td>
<td>Original image is Signed or Not</td>
<td>Unsigned</td>
</tr>
<tr>
<td>-Offset</td>
<td>Optional</td>
<td>OffsetValue</td>
<td>0.0</td>
</tr>
<tr>
<td>-Max</td>
<td>Optional</td>
<td>MaxValue:2^Max</td>
<td>16</td>
</tr>
<tr>
<td>-Min</td>
<td>Optional</td>
<td>MinValue:2^Min: without 0</td>
<td>1</td>
</tr>
<tr>
<td>-realMin</td>
<td>Optional</td>
<td>Real Min</td>
<td>0.0</td>
</tr>
<tr>
<td>-realMax</td>
<td>Optional</td>
<td>Real Max</td>
<td>0.0</td>
</tr>
<tr>
<td>-realMaxBit</td>
<td>Optional</td>
<td>RealMaxVauleBit</td>
<td>14</td>
</tr>
<tr>
<td>-sin</td>
<td>Optional</td>
<td>sin File from Zeiss</td>
<td>NULL</td>
</tr>
<tr>
<td>-c</td>
<td>Optional</td>
<td>ConfigurationFile</td>
<td>NULL</td>
</tr>
<tr>
<td>-S</td>
<td>Optional</td>
<td>ShrinkMode</td>
<td>8</td>
</tr>
<tr>
<td>-M</td>
<td>Optional</td>
<td>Mode1</td>
<td>m=0: 0<br>
m=1: 2</td>
</tr>
<tr>
<td>-m</td>
<td>Optional</td>
<td>Mode2</td>
<td>0</td>
</tr>
<tr>
<td>-h</td>
<td>Optional</td>
<td>Help</td>
<td>　</td>
</tr>
</div>
</table>

===-M details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0x0000000f</td>
<td>Direct or Log</td>
</tr>
<tr>
<td>0x000000f0</td>
<td>Which Color R: 00 G: 10 B: 20</td>
</tr>
</table>

===-m details===
<table border="1">
<tr>
<th>Value</th>
<th>Description</th>
</tr>
<tr>
<td>0</td>
<td>Direct</td>
</tr>
<tr>
<td>1</td>
<td>Log10(65535/data)</td>
</tr>
</table>

== Execution example ==
===[[Media:Input-B120.tiff | Input file]] image===
[[File:Input-B120.png]]

=== Case: Options only essential ===
<div>Output data by [[mrcImageInfo]]</div>
<pre>
Min: 0 (0, 0, 0)
Max: 255 (49, 32, 0)
Mean: 21.0538
SD: 47.6709
SE: 0.595886
Sum: 134744
</pre>
<div>Output data by [[mrcInfo]]</div>
<pre>
N : ( 80, 80, 1)
Mode : 0 mrcCharImage
StartN : ( 0, 0, 0)
M : ( 1, 1, 1)
Length : ( 2.500, 2.500, 2.500)
A,B,G : ( 90.00, 90.00, 90.00)
C,R,S : ( 1, 2, 3)
Min,Max,Mean : ( 0, 255, 21.1)
</pre>

=== Option -r===
====Case: r=5====
<div>Output data by [[mrcImageInfo]]</div>
<pre>
Min: 0 (0, 0, 0)
Max: 255 (49, 32, 0)
Mean: 21.0538
SD: 47.6709
SE: 0.595886
Sum: 134744
</pre>

<div>Output data by [[mrcInfo]]</div>
<pre>
N : ( 80, 80, 1)
Mode : 0 mrcCharImage
StartN : ( 0, 0, 0)
M : ( 1, 1, 1)
Length : ( 5.000, 5.000, 5.000)
A,B,G : ( 90.00, 90.00, 90.00)
C,R,S : ( 1, 2, 3)
Min,Max,Mean : ( 0, 255, 21.1)
</pre>

=== Option -I===
<div>Output data by [[mrcImageInfo]]</div>
<pre>
Min: 0 (49, 32, 0)
Max: 255 (0, 0, 0)
Mean: 233.946
SD: 47.6709
SE: 0.595886
Sum: 1.49726e+06
</pre>

<div>Output data by [[mrcInfo]]</div>
<pre>
N : ( 80, 80, 1)
Mode : 0 mrcCharImage
StartN : ( 0, 0, 0)
M : ( 1, 1, 1)
Length : ( 2.500, 2.500, 2.500)
A,B,G : ( 90.00, 90.00, 90.00)
C,R,S : ( 1, 2, 3)
Min,Max,Mean : ( 0, 255, 234)
</pre>

=== Option -Offset===
====Case: Offset=1====
<div>Output data by [[mrcImageInfo]]</div>
<pre>
Min: 0 (49, 32, 0)
Max: 255 (36, 38, 0)
Mean: 22.0138
SD: 47.5819
SE: 0.594774
Sum: 140888
</pre>

<div>Output data by [[mrcInfo]]</div>
<pre>
N : ( 80, 80, 1)
Mode : 0 mrcCharImage
StartN : ( 0, 0, 0)
M : ( 1, 1, 1)
Length : ( 2.500, 2.500, 2.500)
A,B,G : ( 90.00, 90.00, 90.00)
C,R,S : ( 1, 2, 3)
Min,Max,Mean : ( 0, 255, 22)
</pre>

=== Option -realMin, -realMax===
====Case: realMin=64, realMax=128====
<div>Output data by [[mrcImageInfo]]</div>
<pre>
Min: 64 (0, 0, 0)
Max: 128 (49, 32, 0)
Mean: 69.165
SD: 11.7927
SE: 0.147408
Sum: 442656
</pre>

<div>Output data by [[mrcInfo]]</div>
<pre>
N : ( 80, 80, 1)
Mode : 0 mrcCharImage
StartN : ( 0, 0, 0)
M : ( 1, 1, 1)
Length : ( 2.500, 2.500, 2.500)
A,B,G : ( 90.00, 90.00, 90.00)
C,R,S : ( 1, 2, 3)
Min,Max,Mean : ( 64, 128, 69.2)
</pre>

=== Option -realMaxBit===
====Case: realMaxBit=1, realMin=64, realMax=128====
<div>Output data by [[mrcImageInfo]]</div>
<pre>
Min: 0 (44, 15, 0)
Max: 192 (45, 17, 0)
Mean: 72.44
SD: 39.3767
SE: 0.492209
Sum: 463616
</pre>

<div>Output data by [[mrcInfo]]</div>
<pre>
N : ( 80, 80, 1)
Mode : 0 mrcCharImage
StartN : ( 0, 0, 0)
M : ( 1, 1, 1)
Length : ( 2.500, 2.500, 2.500)
A,B,G : ( 90.00, 90.00, 90.00)
C,R,S : ( 1, 2, 3)
Min,Max,Mean : ( 0, 192, 72.4)
</pre>

=== Option -S===
====Case: S=2====
<div>Output data by [[mrcImageInfo]] </div>
<pre>
Min: 0 (0, 0, 0)
Max: 245 (18, 19, 0)
Mean: 20.9556
SD: 47.2215
SE: 1.18054
Sum: 33529
</pre>

<div>Output data by [[mrcInfo]] </div>
<pre>
N : ( 40, 40, 1)
Mode : 0 mrcCharImage
StartN : ( 0, 0, 0)
M : ( 1, 1, 1)
Length : ( 5.000, 5.000, 2.500)
A,B,G : ( 90.00, 90.00, 90.00)
C,R,S : ( 1, 2, 3)
Min,Max,Mean : ( 0, 245, 21)
</pre>

=== Option -m===
====Case: m=1====
<div>Output data by [[mrcImageInfo]] </div>
<pre>
Min: 0 (49, 32, 0)
Max: 2.40654 (0, 0, 0)
Mean: 1.97942
SD: 0.788953
SE: 0.00986191
Sum: 12668.3
</pre>

<div>Output data by [[mrcInfo]]</div>
<pre>
N : ( 80, 80, 1)
Mode : 2 mrcFloatImage
StartN : ( 0, 0, 0)
M : ( 1, 1, 1)
Length : ( 2.500, 2.500, 2.500)
A,B,G : ( 90.00, 90.00, 90.00)
C,R,S : ( 1, 2, 3)
Min,Max,Mean : ( 0, 2.41, 1.98)
</pre>