Difference between revisions of "mrcImageGaussSphere"

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(Created page with "'''mrcImageGaussSphere''' isガウス球の作成を行う Eos's Command.。 == List of option == === Main option === <table border="1"> <div align="left"> <t...")
 
(→‎Case: -W=500,-H=500,-S=500)
 
(6 intermediate revisions by the same user not shown)
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'''mrcImageGaussSphere''' isガウス球の作成を行う [[Eos]]'s [[Command]].。
+
'''mrcImageGaussSphere''' is [[Eos]]'s [[Command]] that creates a Gauss Sphere.
  
 
== List of option ==
 
== List of option ==
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<td>-o</td>
 
<td>-o</td>
 
<td>Essential</td>
 
<td>Essential</td>
−
<td>Output設定: [[mrcImage]]</td>
+
<td>Output: [[mrcImage]]</td>
 
<td>NULL</td>
 
<td>NULL</td>
 
</tr>
 
</tr>
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<td>-sigmax</td>
 
<td>-sigmax</td>
 
<td>Optional</td>
 
<td>Optional</td>
−
<td>物体のｘ軸の幅を設定</td>
+
<td>sigmax[A]</td>
 
<td>10</td>
 
<td>10</td>
 
</tr>
 
</tr>
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<td>-sigmay</td>
 
<td>-sigmay</td>
 
<td>Optional</td>
 
<td>Optional</td>
−
<td>物体のｙ軸の幅を設定</td>
+
<td>sigmay[A]</td>
 
<td>20</td>
 
<td>20</td>
 
</tr>
 
</tr>
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<td>-sigmaz</td>
 
<td>-sigmaz</td>
 
<td>Optional</td>
 
<td>Optional</td>
−
<td>物体のz軸の幅を設定</td>
+
<td>sigmaz[A]</td>
 
<td>30</td>
 
<td>30</td>
 
</tr>
 
</tr>
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<td>-sigma_range</td>
 
<td>-sigma_range</td>
 
<td>Optional</td>
 
<td>Optional</td>
−
<td>画像データの大きさを設定</td>
+
<td>x times</td>
 
<td>3</td>
 
<td>3</td>
 
</tr>
 
</tr>
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<td>-weight</td>
 
<td>-weight</td>
 
<td>Optional</td>
 
<td>Optional</td>
−
<td>物体の高さを設定</td>
+
<td>weight</td>
 
<td>10</td>
 
<td>10</td>
 
</tr>
 
</tr>
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<td>-size</td>
 
<td>-size</td>
 
<td>Optional</td>
 
<td>Optional</td>
−
<td>ピクセルのサイズを設定</td>
+
<td>Pixel Size[A]</td>
 
<td>5</td>
 
<td>5</td>
 
</tr>
 
</tr>
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<td>-W</td>
 
<td>-W</td>
 
<td>Optional</td>
 
<td>Optional</td>
−
<td>画像データの幅（ｘ軸）を設定</td>
+
<td>Width[A]</td>
 
<td>0</td>
 
<td>0</td>
 
</tr>
 
</tr>
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<td>-H</td>
 
<td>-H</td>
 
<td>Optional</td>
 
<td>Optional</td>
−
<td>画像データの高さ（ｙ軸）を設定</td>
+
<td>Height[A]</td>
 
<td>0</td>
 
<td>0</td>
 
</tr>
 
</tr>
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<td>-S</td>
 
<td>-S</td>
 
<td>Optional</td>
 
<td>Optional</td>
−
<td>画像データの奥行き（ｚ軸）を設定</td>
+
<td>Section[A]</td>
 
<td>0</td>
 
<td>0</td>
 
</tr>
 
</tr>
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</table>
 
</table>
  
−
<div>ファイルサイズ＝(sigma_range*sigmax*2) x (sigma_range*sigmay*2) x (sigma_range*sigmaz*2)</div>
+
<div>mrcImageFileSize＝(sigma_range*sigmax*2) x (sigma_range*sigmay*2) x (sigma_range*sigmaz*2)</div>
  
 
=== -m details ===
 
=== -m details ===
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<tr>
 
<tr>
 
<td>0</td>
 
<td>0</td>
−
<td>char（１バイト）</td>
+
<td>char (1 byte)</td>
 
</tr>
 
</tr>
 
<tr>
 
<tr>
 
<td>2</td>
 
<td>2</td>
−
<td>float（４バイト）</td>
+
<td>float (4 bytes)</td>
 
</tr>
 
</tr>
 
</div>
 
</div>
 
</table>
 
</table>
−
 
  
 
== Execution example ==
 
== Execution example ==
−
===------必須項目のオプションのみの場合------===
+
===------Example of options only essential------===
 
<table>
 
<table>
 
<tr>
 
<tr>
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0.00782576<br></p>
 
0.00782576<br></p>
 
</td>
 
</td>
−
<td>ｚ軸の中央部分の切断面を表示<br>
+
<td>the slice of z-axis central portion<br>
 
　　－－－－－－＞</td>
 
　　－－－－－－＞</td>
 
<td>[[File:Outdata-SectionGet-mrcImageGaussSphere.png]]</td>
 
<td>[[File:Outdata-SectionGet-mrcImageGaussSphere.png]]</td>
Line 141: Line 140:
 
</tr>
 
</tr>
 
</table>
 
</table>
−
+
 
−
===------オプション　-sigmax,-sigmay,-sigmaz------===
+
===------Option -sigmax,-sigmay,-sigmaz------===
−
====-sigmax=50,-sigmay=50,-sigmaz=50====
+
====Case: -sigmax=50,-sigmay=50,-sigmaz=50====
 
<table>
 
<table>
 
<tr>
 
<tr>
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0.00188576<br></p>
 
0.00188576<br></p>
 
</td>
 
</td>
−
<td>ｚ軸の中央部分の切断面を表示<br>
+
<td>the slice of z-axis central portion<br>
 
　　－－－－－－＞</td>
 
　　－－－－－－＞</td>
 
<td>[[File:Outdataoutdata-xyz50-SectionGet-mrcImageGaussSphere.png]]</td>
 
<td>[[File:Outdataoutdata-xyz50-SectionGet-mrcImageGaussSphere.png]]</td>
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</table>
 
</table>
 
 
−
===------オプション　-sigma_range------===
+
===------Option -sigma_range------===
−
====-sigmax=50,-sigmay=50,-sigmaz=1====
+
====Case: -sigmax=50,-sigmay=50,-sigmaz=1====
−
=====-sigma_range=3（デフォルト）=====
+
=====Case: -sigma_range=3 (default)=====
 
<table>
 
<table>
 
<tr>
 
<tr>
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</td>
 
</td>
 
</table>
 
</table>
−
=====-sigma_range=2=====
+
=====Case: -sigma_range=2=====
 
<table>
 
<table>
 
<tr>
 
<tr>
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</table>
 
</table>
  
−
===------オプション　-weight------===
+
===------Option -weight------===
−
====-sigmax=50,-sigmay=50,-sigmaz=1====
+
====Case: -sigmax=50,-sigmay=50,-sigmaz=1====
−
=====-weight=10（デフォルト）=====
+
=====Case: -weight=10 (default)=====
 
<table>
 
<table>
 
<tr>
 
<tr>
Line 234: Line 233:
 
</table>
 
</table>
  
−
=====-weight=30=====
+
=====Case: -weight=30=====
 
<table>
 
<table>
 
<tr>
 
<tr>
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</table>
 
</table>
  
−
===------オプション　-size------===
+
===------Option -size------===
−
====-sigmaz=1====
+
====Case: -sigmaz=1====
−
=====-size=1=====
+
=====Case: -size=1=====
 
<table>
 
<table>
 
<tr>
 
<tr>
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0.00375<br></p>
 
0.00375<br></p>
 
</td>
 
</td>
−
<td>ｚ軸の中央部分の切断面を表示<br>
+
<td>the slice of z-axis central portion<br>
 
　　－－－－－－＞</td>
 
　　－－－－－－＞</td>
 
<td>[[File:Outdata-z1-size1-SectionGet-mrcImageGaussSphere.png]]</td>
 
<td>[[File:Outdata-z1-size1-SectionGet-mrcImageGaussSphere.png]]</td>
Line 289: Line 288:
 
</table>
 
</table>
  
−
===------オプション　-W,-H------===
+
===------Option -W,-H------===
−
====-sigmax=50,-sigmay=50,-sigmaz=1====
+
====Case: -sigmax=50,-sigmay=50,-sigmaz=1====
−
=====-W=500,-H=500,-S=500に設定する=====
+
=====Case: -W=500,-H=500,-S=500=====
 
<table>
 
<table>
 
<tr>
 
<tr>
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3.41949e-07<br></p>
 
3.41949e-07<br></p>
 
</td>
 
</td>
−
<td>ｚ軸の中央部分の切断面を表示<br>
+
<td>the slice of z-axis central portion<br>
 
　　－－－－－－＞</td>
 
　　－－－－－－＞</td>
 
<td>[[File:Outdata-xy50z1-WHS500-SectionGet-mrcImageGaussSphere.png]]</td>
 
<td>[[File:Outdata-xy50z1-WHS500-SectionGet-mrcImageGaussSphere.png]]</td>
Line 324: Line 323:
 
</tr>
 
</tr>
 
</table>
 
</table>
−
<div>※ピクセルサイズがデフォルト（５）となっているので、ｘ軸およびｙ軸の幅は100となる</div>
+
<div>The default of -size is 5. Therefore the width of x, y and z are 100.</div>
  
−
===------オプション　-m------===
+
===------Option -m------===
−
====-sigmax=50,-sigmay=50,-sigmaz=50====
+
====Case: -sigmax=50,-sigmay=50,-sigmaz=50====
−
=====モード：０=====
+
=====Case: m=0=====
 
<table>
 
<table>
 
<tr>
 
<tr>
Line 344: Line 343:
 
0.00038963<br></p>
 
0.00038963<br></p>
 
</td>
 
</td>
−
<td>ｚ軸の中央部分の切断面を表示<br>
+
<td>the slice of z-axis central portion<br>
 
　　－－－－－－＞</td>
 
　　－－－－－－＞</td>
 
<td>[[File:Outdata-xyz50-WHS500m0-SectionGet-mrcImageGaussSphere.png]]</td>
 
<td>[[File:Outdata-xyz50-WHS500m0-SectionGet-mrcImageGaussSphere.png]]</td>
Line 362: Line 361:
 
</table>
 
</table>
  
−
=====モード：２=====
+
=====Case: m=2=====
 
<table>
 
<table>
 
<tr>
 
<tr>
Line 378: Line 377:
 
0.000440193<br></p>
 
0.000440193<br></p>
 
</td>
 
</td>
−
<td>ｚ軸の中央部分の切断面を表示<br>
+
<td>the slice of z-axis central portion<br>
 
　　－－－－－－＞</td>
 
　　－－－－－－＞</td>
 
<td>[[File:Outdata-xyz50-WHS500m2-SectionGet-mrcImageGaussSphere.png]]</td>
 
<td>[[File:Outdata-xyz50-WHS500m2-SectionGet-mrcImageGaussSphere.png]]</td>

Latest revision as of 00:43, 25 July 2014

mrcImageGaussSphere is Eos's Command that creates a Gauss Sphere.

List of option

Main option

Option Essential/Optional NULL Default
-o Essential Output: mrcImage NULL
-sigmax Optional sigmax[A] 10
-sigmay Optional sigmay[A] 20
-sigmaz Optional sigmaz[A] 30
-sigma_range Optional x times 3
-weight Optional weight 10
-size Optional Pixel Size[A] 5
-W Optional Width[A] 0
-H Optional Height[A] 0
-S Optional Section[A] 0
-m Optional Mode 2
-h Optional Help 　
mrcImageFileSize＝(sigma_range*sigmax*2) x (sigma_range*sigmay*2) x (sigma_range*sigmaz*2)

-m details

Value Description
0 char (1 byte)
2 float (4 bytes)

Execution example

------Example of options only essential------

Outdata-mrcImageGaussSphere.png

Min

Max
Mean
SD

SE

1.87953e-11

10
0.222265
0.858162

0.00782576

 the slice of z-axis central portion
　　－－－－－－＞		 Outdata-SectionGet-mrcImageGaussSphere.png

Min

Max
Mean
SD

SE

1.523e-07

10
0.773306
1.80792

0.100285

------Option -sigmax,-sigmay,-sigmaz------

Case: -sigmax=50,-sigmay=50,-sigmaz=50

Outdata-xyz50-mrcImageGaussSphere.png

Min

Max
Mean
SD

SE

1.87953e-11

10
0.24531
0.898424

0.00188576

 the slice of z-axis central portion
　　－－－－－－＞		 Outdataoutdata-xyz50-SectionGet-mrcImageGaussSphere.png

Min

Max
Mean
SD

SE

1.523e-07

10
0.84426
1.87314

0.0307072

------Option -sigma_range------

Case: -sigmax=50,-sigmay=50,-sigmaz=1

Case: -sigma_range=3 (default)
Outdata-xy50z1-mrcImageGaussSphere.png

Min

Max
Mean
SD

SE

2.94008e-10

0.0193046
0.00162981
0.00361602

4.19165e-05
Case: -sigma_range=2
Outdata-xy50z1-sigma range2-mrcImageGaussSphere.png

Min

Max
Mean
SD

SE

0.00335463

0.0193046
0.00162981
0.00361602

4.19165e-05

------Option -weight------

Case: -sigmax=50,-sigmay=50,-sigmaz=1

Case: -weight=10 (default)
Outdata-xy50z1-mrcImageGaussSphere.png

Min

Max
Mean
SD

SE

2.94008e-10

0.0193046
0.00162981
0.00361602

4.19165e-05
Case: -weight=30
Outdata-xy50z1-weight30-mrcImageGaussSphere.png

Min

Max
Mean
SD

SE

8.82023e-10

0.0579137
0.00488942
0.010848

0.00012575

------Option -size------

Case: -sigmaz=1

Case: -size=1
Outdata-z1-size1-mrcImageGaussSphere.png

Min

Max
Mean
SD

SE

1.87953e-11

10
0.215562
0.852389

0.00375

 the slice of z-axis central portion
　　－－－－－－＞		 Outdata-z1-size1-SectionGet-mrcImageGaussSphere.png

Min

Max
Mean
SD

SE

1.523e-07

10
0.851235
1.87929

0.0218744

------Option -W,-H------

Case: -sigmax=50,-sigmay=50,-sigmaz=1

Case: -W=500,-H=500,-S=500
Outdata-xy50z1-WHS500-mrcImageGaussSphere.png

Min

Max
Mean
SD

SE

0

0.0192083
1.21294e-05
0.000341949

3.41949e-07

 the slice of z-axis central portion
　　－－－－－－＞		 Outdata-xy50z1-WHS500-SectionGet-mrcImageGaussSphere.png

Min

Max
Mean
SD

SE

1.00707e-23

0.0192083
0.00060647
0.00234222

2.34222e-05
The default of -size is 5. Therefore the width of x, y and z are 100.

------Option -m------

Case: -sigmax=50,-sigmay=50,-sigmaz=50

Case: m=0
Outdata-xyz50-WHS500m0-mrcImageGaussSphere.png

Min

Max
Mean
SD

SE

0

9
0.0378
0.38963

0.00038963

 the slice of z-axis central portion
　　－－－－－－＞		 Outdata-xyz50-WHS500m0-SectionGet-mrcImageGaussSphere.png

Min

Max
Mean
SD

SE

0

9
0.2476
1.10666

0.0110666
Case: m=2
Outdata-xyz50-WHS500m2-mrcImageGaussSphere.png

Min

Max
Mean
SD

SE

1.19151e-31

9.92528
0.0556833
0.440193

0.000440193

 the slice of z-axis central portion
　　－－－－－－＞		 Outdata-xyz50-WHS500m2-SectionGet-mrcImageGaussSphere.png

Min

Max
Mean
SD

SE

5.20371e-21

9.92528
0.313375
1.21027

0.0121027
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