Difference between revisions of "mrcImagePixelDataGet"
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(→Execution example) |
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<td>Optional</td> | <td>Optional</td> | ||
<td>ConfigurationFile</td> | <td>ConfigurationFile</td> | ||
| − | <td> | + | <td>NULL</td> |
| + | </tr> | ||
| + | <tr> | ||
| + | <td>-om</td> | ||
| + | <td>Optional</td> | ||
| + | <td>Output Mode</td> | ||
| + | <td>0</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-m</td> | <td>-m</td> | ||
<td>Optional</td> | <td>Optional</td> | ||
| − | <td>Mode</td> | + | <td>[[Interpolation]] Mode</td> |
| − | <td> | + | <td>0</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| Line 68: | Line 74: | ||
<td>Optional</td> | <td>Optional</td> | ||
<td>Help</td> | <td>Help</td> | ||
| − | <td> | + | <td> </td> |
</tr> | </tr> | ||
</div> | </div> | ||
</table> | </table> | ||
| + | <br> | ||
| + | |||
| + | === -om details === | ||
| + | <table border="1"> | ||
| + | <tr> | ||
| + | <th>Value</th> | ||
| + | <th>Description</th> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>+1</td> | ||
| + | <td>with coordinates</td> | ||
| + | </tr> | ||
| + | </table> | ||
| + | <br> | ||
| + | |||
| + | ===-m details=== | ||
| + | Setting of [[Interpolation]] method. | ||
| + | <table border="1"> | ||
| + | <div align="left"> | ||
| + | <tr> | ||
| + | <th>Value</th> | ||
| + | <th>Description</th> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>0</td> | ||
| + | <td>Nearest neighbor method</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>1</td> | ||
| + | <td>Bi-linear interpolation method</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>2</td> | ||
| + | <td>Cubic convolution method</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>3</td> | ||
| + | <td>Polynomial interpolation method</td> | ||
| + | </tr> | ||
| + | </div> | ||
| + | </table> | ||
| + | <br> | ||
== Execution example == | == Execution example == | ||
| Line 92: | Line 140: | ||
</tr> | </tr> | ||
</table> | </table> | ||
| − | + | <br> | |
| + | |||
| + | <div>The following file is for example of -In.</div> | ||
| + | <div>[[:Media:Input-B120-s.mrc | -i file]]'s image</div> | ||
| + | <table> | ||
| + | <tr> | ||
| + | <td>[[File:Input-B120.png]]</td> | ||
| + | <td><p align="left">Min<br> | ||
| + | Max<br> | ||
| + | Mean<br> | ||
| + | SD<br> | ||
| + | SE<br></p> | ||
| + | </td> | ||
| + | <td><p align="left">0 (0, 0, 0)<br> | ||
| + | 65535 (49, 32, 0)<br> | ||
| + | 5410.81<br> | ||
| + | 12251.4<br> | ||
| + | 153.143<br></p> | ||
| + | </td> | ||
| + | </tr> | ||
| + | </table> | ||
| + | <br> | ||
| + | |||
===------Example of options only essential------=== | ===------Example of options only essential------=== | ||
<div>The pixel data of input file is shown as the following.</div> | <div>The pixel data of input file is shown as the following.</div> | ||
| Line 111: | Line 181: | ||
It doesn't effect -z, because z size of the image is 0. | It doesn't effect -z, because z size of the image is 0. | ||
| − | [[File:Input-mrcImagePixelDataGet.png]] | + | [[File:Input-mrcImagePixelDataGet.png]]<br> |
| + | <br> | ||
| + | |||
| + | ===------Option -In------=== | ||
| + | <div>-In file is as the following.</div> | ||
| + | <pre> | ||
| + | 0 0 0 | ||
| + | 44.5 31.5 0 | ||
| + | 49 32 0 | ||
| + | |||
| + | </pre> | ||
| + | |||
| + | ====Case: No other settings==== | ||
| + | <div>Output</div> | ||
| + | <pre> | ||
| + | 0.000000 0.000000 0.000000 : 0.000000 | ||
| + | 44.500000 31.500000 0.000000 : 28013.000000 | ||
| + | 49.000000 32.000000 0.000000 : 65535.000000 | ||
| + | </pre> | ||
| + | <br> | ||
| + | |||
| + | <div>-o 's data</div> | ||
| + | <pre> | ||
| + | 0.000000 | ||
| + | 28013.000000 | ||
| + | 65535.000000 | ||
| + | </pre> | ||
| + | <br> | ||
| + | |||
| + | ====Case: om=1 ==== | ||
| + | <div>Output</div> | ||
| + | <pre> | ||
| + | 0.000000 0.000000 0.000000 : 0.000000 | ||
| + | 44.500000 31.500000 0.000000 : 28013.000000 | ||
| + | 49.000000 32.000000 0.000000 : 65535.000000 | ||
| + | </pre> | ||
| + | <br> | ||
| + | |||
| + | <div>-o 's data</div> | ||
| + | <pre> | ||
| + | 0.000000 0.000000 0.000000 0.000000 | ||
| + | 44.500000 31.500000 0.000000 28013.000000 | ||
| + | 49.000000 32.000000 0.000000 65535.000000 | ||
| + | </pre> | ||
| + | <div>The coordinates are added in Output file.</div> | ||
| + | <br> | ||
| + | |||
| + | ====Case: m=1 ==== | ||
| + | <div>Output</div> | ||
| + | <pre> | ||
| + | 0.000000 0.000000 0.000000 : 0.000000 | ||
| + | 44.500000 31.500000 0.000000 : 28141.500000 | ||
| + | 49.000000 32.000000 0.000000 : 65535.000000 | ||
| + | </pre> | ||
| + | <div>There is difference about the gotten data depending [[Interpolation]] method.</div> | ||
| + | <br> | ||
| + | |||
| + | ====Case: m=2 ==== | ||
| + | <div>Output</div> | ||
| + | <pre> | ||
| + | 0.000000 0.000000 0.000000 : 0.000000 | ||
| + | 44.500000 31.500000 0.000000 : 26298.328125 | ||
| + | 49.000000 32.000000 0.000000 : 65535.000000 | ||
| + | </pre> | ||
| + | <br> | ||
| + | |||
| + | ====Case: m=3 ==== | ||
| + | <div>Output</div> | ||
| + | <pre> | ||
| + | 0.000000 0.000000 0.000000 : 0.000000 | ||
| + | 44.500000 31.500000 0.000000 : 26317704.905222 | ||
| + | 49.000000 32.000000 0.000000 : 49474638.844293 | ||
| + | </pre> | ||
| + | <br> | ||
Latest revision as of 06:23, 5 August 2014
mrcImagePixelDataGetは Eos's Command that shows the pixel data.
Contents
List of option
| Option | Essential/Optional | Description | Default |
|---|---|---|---|
| -i | Essential | Input: mrcImage | NULL |
| -o | Optional | Output: ASCII | NULL |
| -x | Optional | Input: x | 0.0 |
| -y | Optional | Input: y | 0.0 |
| -z | Optional | Input: z | 0.0 |
| -In | Optional | Input:eosPoint | stdin |
| -cuda | Optional | cudaDeviceID | 0 |
| -c | Optional | ConfigurationFile | NULL |
| -om | Optional | Output Mode | 0 |
| -m | Optional | Interpolation Mode | 0 |
| -h | Optional | Help |
-om details
| Value | Description |
|---|---|
| +1 | with coordinates |
-m details
Setting of Interpolation method.
| Value | Description |
|---|---|
| 0 | Nearest neighbor method |
| 1 | Bi-linear interpolation method |
| 2 | Cubic convolution method |
| 3 | Polynomial interpolation method |
Execution example
------Input file's image------
 |
Min Max |
-64.5759 93.0617 |
The following file is for example of -In.
-i file's image
 |
Min Max |
0 (0, 0, 0) 65535 (49, 32, 0) |
------Example of options only essential------
The pixel data of input file is shown as the following.
------Option -o------
-o: Output to specified file.
e.g. If "outputdatafile" file is specified, it outputs the following to outputdatafile.
------Option -x,-y,-z------
Case: -x=10
Output→
Case: -x,-y=10
Output→
Case: -x,-y,-z=10
Output→
It doesn't effect -z, because z size of the image is 0.
------Option -In------
-In file is as the following.
0 0 0 44.5 31.5 0 49 32 0
Case: No other settings
Output
0.000000 0.000000 0.000000 : 0.000000 44.500000 31.500000 0.000000 : 28013.000000 49.000000 32.000000 0.000000 : 65535.000000
-o 's data
0.000000 28013.000000 65535.000000
Case: om=1
Output
0.000000 0.000000 0.000000 : 0.000000 44.500000 31.500000 0.000000 : 28013.000000 49.000000 32.000000 0.000000 : 65535.000000
-o 's data
0.000000 0.000000 0.000000 0.000000 44.500000 31.500000 0.000000 28013.000000 49.000000 32.000000 0.000000 65535.000000
The coordinates are added in Output file.
Case: m=1
Output
0.000000 0.000000 0.000000 : 0.000000 44.500000 31.500000 0.000000 : 28141.500000 49.000000 32.000000 0.000000 : 65535.000000
There is difference about the gotten data depending Interpolation method.
Case: m=2
Output
0.000000 0.000000 0.000000 : 0.000000 44.500000 31.500000 0.000000 : 26298.328125 49.000000 32.000000 0.000000 : 65535.000000
Case: m=3
Output
0.000000 0.000000 0.000000 : 0.000000 44.500000 31.500000 0.000000 : 26317704.905222 49.000000 32.000000 0.000000 : 49474638.844293
