Difference between revisions of "mrcImageCorrelation"

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(Created page with "'''mrcImageCorrelation''' is Eos's Command that creates a correlation map. == List of option == === Main option === <table border="1"> <div align="left"> <tr>...")
 
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<tr>
 
<tr>
 
<td>-o</td>
 
<td>-o</td>
−
<td>Essential</td>
+
<td>Optional</td>
 
<td>Output: [[mrcImage]]</td>
 
<td>Output: [[mrcImage]]</td>
 
<td>NULL</td>
 
<td>NULL</td>
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</tr>
 
</tr>
 
<tr>
 
<tr>
−
<td>-c</td>
+
<td>-corInfo</td>
 
<td>Optional</td>
 
<td>Optional</td>
−
<td>Correlation Info</td>
+
<td>Correlation Info: [[ASCII]]</td>
 
<td>stdout</td>
 
<td>stdout</td>
 
</tr>
 
</tr>
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RefineMode: Setting mode</td>
 
RefineMode: Setting mode</td>
 
</tr>
 
</tr>
 +
<tr>
 +
<td>-c</td>
 +
<td>Optional</td>
 +
<td>ConfigurationFile</td>
 +
<td>NULL</td>
 +
</tr>
 
<tr>
 
<tr>
 
<td>-m</td>
 
<td>-m</td>
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</table>
 
</table>
  
−
===------Option -c------===
+
===------Option -corInfo------===
 
<div>The following data is written to the file.</div>
 
<div>The following data is written to the file.</div>
 
====Case: M=0====
 
====Case: M=0====

Revision as of 00:41, 26 August 2014

mrcImageCorrelation is Eos's Command that creates a correlation map.

List of option

Main option

Option Essential/Optional Description Default
-i Essential Input: mrcImage NULL
-o Optional Output: mrcImage NULL
-O Optional Output: mrcImage NULL
-r Essential Reference: mrcImage NULL
-corInfo Optional Correlation Info: ASCII stdout
-a Optional Averaged File between 2 images NULL
-s Optional Shifted InputFile NULL
-refine Optional Refine (RefineStep RefineRange RefineMode)→(0.25 3.0 2)

RefineStep: Setting step
RefineRange: Setting range

RefineMode: Setting mode
-c Optional ConfigurationFile NULL
-m Optional Mode1 0
-M Optional Mode2 0
-h Optional Help 　

-m details

Value Description
0 Normal Correlation: FxG*
1 Phase Correlation: FxG*/|FxG*|
2 Phase Correlation: FxG*/sqrt(|FxG*|)
3 Normalized Normal Correlation: FxG*/(|F||G|)
16 (0,0) = 0

-M details

Value Description
0 Correlation by FFT. Output is a mrcImage to file.
1 Normalized correlation value. No shift transform and No Correlation Map



Execution example

------Input file's image------

with Noise 　　　　 no Noise
B112-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

-45.2205

61.1583
1.34228
13.1981

0.164976

 A044-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

0

39.0578
1.30214
5.13643

0.0642053

------Reference file's image------

B116-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

-44.5884

62.2917
1.20602
13.084

0.16355

 B060-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

0

40.8834
1.30222
5.16838

0.0646047

------Option -o------

B116.out-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

-696.555

2670.19
129.504
439.371

5.49214

 A044.out-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

-0.000195313

2169.32
135.653
368.225

4.60281

------Option -O------

Option -O is necessary to set the option -refine.

Case: refine=1.75 70 0

B116.Out0-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

1.23885

1.44004
1.39867
0.0198941

0.000245606

 A044.Out0-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

0.262565

1.41038
1.31497
0.177727

0.00219416

Case: refine=1.75 70 1

B116.Out1-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

1.45204

1.63609
1.56799
0.0183415

0.000226438

 A044.Out1-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

0.696388

1.63042
1.51598
0.109251

0.00134878

Case: refine=1.75 70 2

B116.Out2-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

1.71269

1.86756
1.81222
0.0163492

0.000201842

 A044.Out2-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

1.12474

1.99758
1.77708
0.097391

0.00120236

------Option -corInfo------

The following data is written to the file.

Case: M=0

A044.out-cM0-mrcImageCorrelation.png

Case: M=1

A044.out-cM1-mrcImageCorrelation.png

------Option -a------

B116.out-a1-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

-35.1267

59.0675
1.27415
10.1106

0.126383

 A044.Out-a1-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

0

38.1336
1.30218
5.09747

0.0637183

------Option -s------

B116.out-s1-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

-44.5884

62.2917
1.20602
13.084

0.16355

 A044.Out-s1-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

0

39.0578
1.30214
5.13643

0.0642053

------Option -m------

Case: m=0

B116.out-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

-696.555

2670.19
129.504
439.371

5.49214

 A044.out-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

-0.000195313

2169.32
135.653
368.225

4.60281

Case: m=1

B116.out-m1-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

-3.67017

3.71466
0.0125
0.999922

0.012499

 A044.out-m1-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

-9.80742

7.48342
0.0125
0.999922

0.012499

Case: m=2

B116.out-m2-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

-44.7368

62.2468
1.27232
11.938

0.149225

 A044.out-m2-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

-6.01609

44.7194
1.30218
5.11859

0.0639824

Case: m=3

B116.out-m3-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

-0.0672328

0.257732
0.0125
0.0424089

0.000530111

 A044.out-m3-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

-1.78814e-08

0.199896
0.0125
0.0339307

0.000424134

Case: m=16

B116.out-m16-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

-826.059

2540.68
-5.7012e-07
439.371

5.49214

 A044.out-m16-mrcImageCorrelation.png

Min

Max
Mean
SD

SE

-135.653

2033.67
1.28926e-07
368.225

4.60281
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