Difference between revisions of "mrcImageFourierNeighborCorrelation"
From EosPedia
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<td>Output flag of predicted [[FSC]]</td> | <td>Output flag of predicted [[FSC]]</td> | ||
<td></td> | <td></td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>-Cref</td> | ||
| + | <td>Optional</td> | ||
| + | <td>Output:Cref</td> | ||
| + | <td></td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>-FSCfull</td> | ||
| + | <td>Optional</td> | ||
| + | <td>Output:[[FSC]] full</td> | ||
| + | <td></td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>-NoiseWeighted</td> | ||
| + | <td>Optional</td> | ||
| + | <td>NoiseWeighted: Cref*exp(-Brestore/(4*d^2)</td> | ||
| + | <td>-100.0</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
Revision as of 00:55, 20 October 2014
mrcImageFourierNeighborCorrelation is Eos's Command to check a resolution by utilizing the redundancy of Fourier Space.
Contents
List of option
Main option
| Option | Essential/Optional | Description | Default |
|---|---|---|---|
| -i | Essential | Input: mrcImage(3D) | NULL |
| -o | Optional | Output: ASCII(FNC) | stdout |
| -d | Optional | delta on Fourier Space | 0.0 |
| -C | Optional | CentreMode | 0 |
| -M | Optional | Interpolation Mode | 0 |
| -FSC | Optional | Output flag of predicted FSC | |
| -Cref | Optional | Output:Cref | |
| -FSCfull | Optional | Output:FSC full | |
| -NoiseWeighted | Optional | NoiseWeighted: Cref*exp(-Brestore/(4*d^2) | -100.0 |
| -mask | Optional | Input: mrcImage(3D)(Mask for FSC) | NULL |
| -maskBack | Optional | Input: mrcImage(3D)(Mask for FSC Back) | NULL |
| -c | Optional | ConfigurationFile | NULL |
| -m | Optional | Mode | 0 |
| -h | Optional | Help |
-mask details
Use the binary file as same shape as -i file.
(Example)
First, Get Low-frequency component of -i file by using mrcImageLowPassFilter.
Next, binarize it by using mrcImageBinalization(m=32).
-maskBack details
Use the file. (The size is same as -i file, and the all value is 1)
In addition, In addition, multiply the same windowing as -i file.
(Example)
First, get size of -i file by using mrcInfo.
Next, create the image whose value of all is 1, by using mrcImageNullImageCreate(v=1).
Finally, multiply the same windowing by using mrcImageWindowing.
-C details
| Value | Description |
|---|---|
| 0 | Centre is ImageCentre Shift: (Nx/2.0, Ny/2.0, Nz/2.0 ) |
| 1 | Centre is BottomLeft Shift: (0, 0, 0 ) |
| 2 | Use StartN Shift: (StartNx,StartNy,StartNz) |
-M details
c.f. Interpolation Mode
-m details
| Value | Description |
|---|---|
| 0 |
