Difference between revisions of "mrcImageCircumferentialProjection"
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=== Option -rmin, -rmax, dr=== | === Option -rmin, -rmax, dr=== | ||
| − | ====rmin=90, rmax=110, dr=1==== | + | ====Case: rmin=90, rmax=110, dr=1==== |
<table> | <table> | ||
<tr> | <tr> | ||
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=== Option -dang=== | === Option -dang=== | ||
| − | ====dang=1==== | + | ====Case: dang=1==== |
<table> | <table> | ||
<tr> | <tr> | ||
| Line 203: | Line 203: | ||
=== Option -zmin, -zmax, -dz=== | === Option -zmin, -zmax, -dz=== | ||
| − | ====zmin=10, zmax=50, dz=1==== | + | ====Case: zmin=10, zmax=50, dz=1==== |
=====Case: No other settings===== | =====Case: No other settings===== | ||
<table> | <table> | ||
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| − | =====threshold=1.8===== | + | =====Case: threshold=1.8===== |
<table> | <table> | ||
<tr> | <tr> | ||
| Line 245: | Line 245: | ||
=== Option -m=== | === Option -m=== | ||
| − | ====m=1==== | + | ====Case: m=1==== |
<table> | <table> | ||
<tr> | <tr> | ||
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| − | ====m=2, threshold=2==== | + | ====Case: m=2, threshold=2==== |
<table> | <table> | ||
<tr> | <tr> | ||
Revision as of 01:04, 23 July 2014
mrcImageCircumferentialProjection is Eos's Command that transforms the 3D image to a cylindrical coordinate system, and shows only that particular range.
Contents
List of option
Main option
| Option | Essential/Optional | Description | Default |
|---|---|---|---|
| -i | Essential | Input: mrcImage | NULL |
| -o | Essential | Output: mrcImage | NULL |
| -dang | Optional | Delta Angle: [deree] | 10 |
| -zmin | Optional | Z Minimum: [A] | 0 |
| -zmax | Optional | Z Maximum: [A] | 100 |
| -dz | Optional | Delta Z: [A] | 10 |
| -rmin | Optional | Radius Minimum: [A] | 0 |
| -rmax | Optional | Radius Maximum: [A] | 200 |
| -dr | Optional | Delta Radius: [A] | 10 |
| -threshold | Optional | Set threshold value. (Averaged density is more than threshold value) | 0 |
| -c | Optional | ConfigurationFile | NULL |
| -m | Optional | Mode | 0 |
| -h | Optional | Help |
-m details
| Value | Description |
|---|---|
| 0 | Out Put Averaged Density (dataSum = dataSum / nang) |
| 1 | Out Put Added Density (dataSum = dataSum / nang *(2*PI*r)) |
| 2 | Out Put Averaged Density more than threshold (dataSum = dataSum / [nang number more than threshold value] *(2*PI*r)) |
Execution example
Input file image
|
|
Min Max |
0 (0, 0, 0) 5.57707 (44, 26, 0) |
Example of options only essential
 |
Min Max |
0 (0, 0, 0) 3.12088 (10, 6, 0) |
Option -rmin, -rmax, dr
Case: rmin=90, rmax=110, dr=1
 |
Min Max |
0.0895108 (20, 4, 0) 3.12088 (10, 6, 0) |
Option -dang
Case: dang=1
 |
Min Max |
0.0659651 (20, 4, 0) 3.25403 (9, 6, 0) |
Option -zmin, -zmax, -dz
Case: zmin=10, zmax=50, dz=1
Case: No other settings
 |
Min Max |
0.0895382 (20, 4, 0) 2.17163 (10, 25, 0) |
Case: threshold=1.8
 |
Min Max |
0 (0, 0, 0) 1.78549 (11, 25, 0) |
Option -m
Case: m=1
 |
Min Max |
61.8654 (20, 4, 0) 1960.91 (10, 6, 0) |
Case: m=2, threshold=2
 |
Min Max |
0 (0, 0, 0) 3.68241 (11, 6, 0) |
