Difference between revisions of "mrcImageDeconvolution"
From EosPedia
(→Algorithm) |
(→Main option) |
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<td>-k</td> | <td>-k</td> | ||
<td>Essential</td> | <td>Essential</td> | ||
| − | <td> | + | <td>KernelFile: [[mrcImage]]</td> |
<td>NULL</td> | <td>NULL</td> | ||
</tr> | </tr> | ||
| Line 47: | Line 47: | ||
<td>-o</td> | <td>-o</td> | ||
<td>Optional</td> | <td>Optional</td> | ||
| − | <td> | + | <td>Parameter: [[ASCII]]</td> |
<td>stdout</td> | <td>stdout</td> | ||
</tr> | </tr> | ||
| Line 53: | Line 53: | ||
<td>-ORSMD</td> | <td>-ORSMD</td> | ||
<td>Optional</td> | <td>Optional</td> | ||
| − | <td> | + | <td>Parameter: [[mrcImage]]</td> |
<td>NULL</td> | <td>NULL</td> | ||
</tr> | </tr> | ||
Latest revision as of 00:11, 24 July 2014
mrcImageDeconvolution is Eos's Command.
Contents
Algorithm
Deconvolution algorithms are compliant algorithm utilized in mrcImageCTFCompensation (Specializing in the CTF of the electron microscope)
List of option
Main option
| Option | Essential/Optional | Description | Default |
|---|---|---|---|
| -i | Essential | Input: mrcImage | NULL |
| -k | Essential | KernelFile: mrcImage | NULL |
| -kcentre | Optional | KernelCentre | 1 |
| -o | Essential | Output: mrcImage | NULL |
| -oconv | Optional | Output: mrcImage (Conv*Dst to compare with in) | NULL |
| -o | Optional | Parameter: ASCII | stdout |
| -ORSMD | Optional | Parameter: mrcImage | NULL |
| -thresCTF | Optional | threshold CTF for InverseFilter | 1e-4 |
| -NSRatio | Optional | N/S Ratio for R-dependent Wiener Filter | 0.0 |
| -NSCoeff | Optional | N/S Coeff for R-dependent Wiener Filter | 0.0 |
| -Pad3DMode | Optional | lmrcImage3DPad Mode | 1 |
| -r | Optional | Pad3D: [pix] Threshold radius of signal.Default is min(Nx,Ny). | 0 |
| -w | Optional | Pad3D: [pix] Width of slope. For mode 1. | 1 |
| -v | Optional | Pad3D: Value of out of threshold. | 0 |
| -Floating | Optional | Pad3D: Floating | |
| -maxIter | Optional | maxIteration for Iterative | 0 |
| -minRSMD | Optional | min of MRSD for Iterative | 0.0 |
| -lambda | Optional | lambda for Iterative | 0.5 |
| -c | Optional | ConfigurationFile | NULL |
| -m | Optional | Mode | 0 |
| -h | Optional | Help |
Deconvolution Mode details
| Value | Description |
|---|---|
| 0 | No deconvolution |
| 1 | CTF/|CTF| (phase flipping) |
| 2 | CTF (CTF-Multi) |
| 3 | 1/CTF (Inverse Filter) |
| 4 | CTF/(SQR(CTF)+SQR(NS)) (Wiener Filter) |
| 5 | SQR(CTF) x CTF/|CTF| (phase flipping + ctfWeighted) |
| 6 | 1/|CTF| (No phase-flipping: Inverse Filter) |
| 7 | |CTF|/(SQR(CTF)+SQR(NS)) (No phase-flipping: Wiener Filter) |
| 8 | CTF /(SQR(CTF)+SQR(NS*exp(a*R))) (phase-flipping: Wiener Filter + Noise) |
| 9 | |CTF|/(SQR(CTF)+SQR(NS*exp(a*R))) (No phase-flipping: Wiener Filter + Noise) |
-m details
| Value | Description |
|---|---|
| 0 |
